CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, golgi

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX68821
CDX70720
CDX73599
CDX75224
CDX77702
CDX78128
CDX78712
CDX84933
CDX89333
CDX94330
CDY03907
CDY13344
CDY15722
CDY27605
CDY33485
CDY37158
CDY43620
CDY61387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	CDX84933	AT1G27300.1	21798944
AT5G39510.1	CDY03907	AT1G27300.1	21798944
AT5G39510.1	CDY15722	AT1G27300.1	21798944
AT5G39510.1	CDY27605	AT1G27300.1	21798944
AT5G39510.1	CDX67539	AT3G52850.1	10397763
AT5G39510.1	CDX73599	AT3G52850.1	10397763
AT5G39510.1	CDX78128	AT3G52850.1	10397763
AT5G39510.1	CDY13344	AT3G52850.1	10397763
AT5G39510.1	CDX89333	AT4G26455.1	21798944
AT5G39510.1	CDX94330	AT4G26455.1	21798944
AT5G39510.1	CDX68821	AT4G32150.1	24556575
AT5G39510.1	CDX75224	AT4G32150.1	24556575
AT5G39510.1	CDY61387	AT4G32150.1	24556575
AT5G39510.1	CDX70720	AT5G16830.1	10397763
AT5G39510.1	CDX78712	AT5G16830.1	10397763
AT5G39510.1	CDX77702	AT5G46860.1	12815100
AT5G39510.1	CDY33485	AT5G46860.1	12815100
AT5G39510.1	CDY37158	AT5G46860.1	12815100
AT5G39510.1	CDY43620	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74451	Canola	cytosol, golgi, nucleus	99.09	99.09
CDY37005	Canola	cytosol, golgi, nucleus	89.14	89.14
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	83.26	83.26
CDY19995	Canola	cytosol	83.26	83.26
CDY00099	Canola	cytosol	82.35	82.35
PGSC0003DMT400050219	Potato	cytosol	72.4	72.4
KRG93576	Soybean	cytosol	72.4	72.4
Solyc03g115760.2.1	Tomato	nucleus, plastid	71.95	71.95
KRH18448	Soybean	endoplasmic reticulum	71.95	71.95
VIT_14s0108g01200.t01	Wine grape	cytosol	70.14	70.14
CDX95233	Canola	mitochondrion	28.05	67.39
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	28.05	67.39
KRH40042	Soybean	cytosol	60.18	58.59
CDY44068	Canola	cytosol	58.82	58.56
CDY28553	Canola	cytosol	58.82	58.56
CDX79270	Canola	cytosol	25.79	44.19
CDY42125	Canola	mitochondrion	24.43	38.85

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	GO:A0A078GUR9	UniProt:A0A078GUR9	EnsemblPlants:CDY30250
ProteinID:CDY30250	ProteinID:CDY30250.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	EnsemblPlantsGene:GSBRNA2T00044884001	InterPro:IPR038407
PFAM:PF05008	PFAM:PF12352	PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE
SUPFAM:SSF47661	SUPFAM:SSF58038	TMHMM:TMhelix	UniParc:UPI0004EDFBDF	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg
InterPro:v-SNARE_N_sf	:	:	:	:	:

Description

BnaC04g31610DBnaC04g31610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GUR9]

Coordinates

chrLK032251:+:54122..55828

Molecular Weight (calculated)

24727.0 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.397

Length

221 amino acids

Sequence
(BLAST)

001: MSEVFNGYER QYCDLSANLS KKCSSAIALD GEQKKQKLSE IRSGLDNAEA LIRKMDVEAR SLPPSIRTSL LVKLREFKSD LNNFKSEVKR ITSANLNAAA
101: RDELLEAGLA DTKTASADQR ARLMMSTDRL GRTTDRIKDS RRMMIETEEL GVSVLQDLHS QRQSLLRTGD TLSGVDENVG KSKKILTGMT RRMNRNKWTI
201: GAIITALVAA IILILYFKLT K

Best Arabidopsis Sequence Match ( AT5G39510.1 )
(BLAST)

001: MSDVFDGYER QYCELSASLS KKCSSAISLD GEQKKQKLSE IKSGLENAEV LIRKMDLEAR TLPPNLKSSL LVKLREFKSD LNNFKTEVKR ITSGQLNAAA
101: RDELLEAGMA DTKTASADQR ARLMMSTERL GRTTDRVKDS RRTMMETEEI GVSILQDLHG QRQSLLRAHE TLHGVDDNIG KSKKILTDMT RRMNKNKWTI
201: GAIIIALIAA IFIILYFKLT K

Arabidopsis Description

VTI11Vesicle transport v-SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL6]
SUBAcon: [cytosol,nucleus,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.