Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol, golgi, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 3
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025661.1-P | Field mustard | cytosol, golgi, mitochondrion, nucleus, plastid | 100.0 | 100.0 |
| CDX95233 | Canola | mitochondrion | 96.74 | 96.74 |
| CDY30250 | Canola | cytosol, golgi, nucleus | 67.39 | 28.05 |
| CDX74451 | Canola | cytosol, golgi, nucleus | 66.3 | 27.6 |
| CDY37005 | Canola | cytosol, golgi, nucleus | 63.04 | 26.24 |
| CDY00099 | Canola | cytosol | 59.78 | 24.89 |
| CDY19995 | Canola | cytosol | 59.78 | 24.89 |
| AT5G39510.1 | Thale cress | cytosol, golgi, nucleus | 58.7 | 24.43 |
| VIT_14s0108g01200.t01 | Wine grape | cytosol | 52.17 | 21.72 |
| KRG93576 | Soybean | cytosol | 48.91 | 20.36 |
| KRH18448 | Soybean | endoplasmic reticulum | 48.91 | 20.36 |
| PGSC0003DMT400050219 | Potato | cytosol | 48.91 | 20.36 |
| Solyc03g115760.2.1 | Tomato | nucleus, plastid | 48.91 | 20.36 |
| CDY28553 | Canola | cytosol | 41.3 | 17.12 |
| CDX79270 | Canola | cytosol | 23.91 | 17.05 |
| KRH40042 | Soybean | cytosol | 41.3 | 16.74 |
| CDY44068 | Canola | cytosol | 40.22 | 16.67 |
| CDY42125 | Canola | mitochondrion | 5.43 | 3.6 |
Protein Annotations
| EnsemblPlants:CDX74445 | EnsemblPlantsGene:GSBRNA2T00114314001 | Gene3D:1.20.5.110 | GO:A0A078CCA5 | PANTHER:PTHR21230 | PANTHER:PTHR21230:SF52 |
| ProteinID:CDX74445 | ProteinID:CDX74445.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002544976 | MapMan:35.2 |
Description
BnaA04g09440D
Coordinates
chrLK031801:-:368823..369211
Molecular Weight (calculated)
10232.6 Da
IEP (calculated)
11.656
GRAVY (calculated)
-0.249
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MRSTDGLGRT TDRIKRLKSL ASQSSKTCTV RDSLPLLRTN DTLSGVDDNV GKSKKTLTGM TRRMNRNKWT IGAIITALVA AIILIFYFKL TK
001: MDLEARNLPP NVKSSLLVKL REYKSDLNNF KTEVKRITSG NLNATARDEL LEAGMADTLT ASADQRSRLM MSTDHLGRTT DRIKDSRRTI LETEELGVSI
101: LQDLHGQRQS LLRAHETLHG VDDNVGKSKK ILTTMTRRMN RNKWTIGAII TVLVLAIIFI LYFKLTR
101: LQDLHGQRQS LLRAHETLHG VDDNVGKSKK ILTTMTRRMN RNKWTIGAII TVLVLAIIFI LYFKLTR
Arabidopsis Description
VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.