Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024989.1-P | Field mustard | cytosol | 99.26 | 99.63 |
| CDY33485 | Canola | cytosol | 99.26 | 99.63 |
| CDY43620 | Canola | cytosol | 92.62 | 94.01 |
| CDY37158 | Canola | cytosol | 91.14 | 92.51 |
| AT5G46860.1 | Thale cress | cytosol | 90.04 | 91.04 |
| CDX78796 | Canola | cytosol | 81.55 | 80.07 |
| CDY60786 | Canola | cytosol | 80.44 | 79.85 |
| KRH07229 | Soybean | endoplasmic reticulum | 79.34 | 78.75 |
| KRH39570 | Soybean | cytosol | 78.23 | 77.66 |
| KRH07476 | Soybean | cytosol | 78.23 | 77.66 |
| KRH74378 | Soybean | cytosol | 78.23 | 77.66 |
| CDY01478 | Canola | cytosol | 77.49 | 75.81 |
| CDY01290 | Canola | cytosol | 74.91 | 75.46 |
| CDX90452 | Canola | cytosol | 76.01 | 74.1 |
| CDX93845 | Canola | cytosol | 71.22 | 73.38 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 73.06 | 71.48 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 71.96 | 71.43 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 72.69 | 71.12 |
| Os01t0254900-01 | Rice | plasma membrane | 73.43 | 71.07 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 71.59 | 70.04 |
| EES02705 | Sorghum | cytosol | 71.22 | 68.93 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 70.85 | 68.82 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 69.0 | 68.5 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 67.16 | 66.67 |
| CDY38084 | Canola | cytosol | 46.86 | 64.47 |
| CDY16976 | Canola | cytosol, plastid | 64.58 | 63.41 |
| CDX70720 | Canola | cytosol, plastid | 64.21 | 63.04 |
| CDX78712 | Canola | cytosol, plastid | 64.21 | 63.04 |
| CDX69417 | Canola | cytosol, plastid | 64.21 | 62.37 |
| Zm00001d040286_P003 | Maize | cytosol | 61.99 | 56.19 |
| Os02t0702800-01 | Rice | cytosol | 54.61 | 55.43 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 53.51 | 54.51 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 53.14 | 54.14 |
| EES05663 | Sorghum | cytosol | 51.29 | 51.87 |
| Zm00001d017756_P001 | Maize | extracellular | 47.23 | 51.61 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 52.77 | 48.97 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 48.34 | 48.7 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 48.34 | 47.29 |
| Zm00001d008333_P003 | Maize | cytosol | 53.51 | 44.62 |
| Zm00001d039536_P001 | Maize | cytosol | 39.85 | 41.06 |
| CDY03181 | Canola | cytosol | 33.95 | 35.25 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | GO:A0A078CLT1 | EnsemblPlants:CDX77702 | ProteinID:CDX77702 |
| ProteinID:CDX77702.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00128684001 | InterPro:IPR000727 | PFAM:PF05739 | PFAM:PF14523 |
| ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0004EE223C | SEG:seg | : | : | : | : |
Description
BnaC07g19560D
Coordinates
chrLK031812:-:1065616..1067334
Molecular Weight (calculated)
29425.0 Da
IEP (calculated)
6.807
GRAVY (calculated)
-0.344
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLEAGK GRSRKVNGGG GGSRQDSTQA VASGIFQINT GVSTFQRLVN TLGTPKDTPE LREKLHKTRL HIGQLVKDTS AKLKEASETD HRSGVNPSKK
101: IADAKLAKDF QAVLKEFQKA QQTAAERETA YAPLVPPSAH PSSYTASEAD KIPEQRAQVM ESKRQELVLL DNEIAFNEAV IEEREQGIQE IHTQIGEVNE
201: IFKDLAVLVN DQGVMIDDIG THIDNSRAAT AQGKSQLAQA SKTQRSNSSL TCLLLVIFGI VLLIVIIVLA A
101: IADAKLAKDF QAVLKEFQKA QQTAAERETA YAPLVPPSAH PSSYTASEAD KIPEQRAQVM ESKRQELVLL DNEIAFNEAV IEEREQGIQE IHTQIGEVNE
201: IFKDLAVLVN DQGVMIDDIG THIDNSRAAT AQGKSQLAQA SKTQRSNSSL TCLLLVIFGI VLLIVIIVLA A
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.