Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH07229 | Soybean | endoplasmic reticulum | 76.7 | 78.39 |
| PGSC0003DMT400084469 | Potato | cytosol, golgi, mitochondrion, nucleus | 17.56 | 77.78 |
| KRH07476 | Soybean | cytosol | 75.99 | 77.66 |
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 75.99 | 77.37 |
| PGSC0003DMT400043211 | Potato | cytosol | 74.55 | 76.19 |
| KRH39570 | Soybean | cytosol | 74.19 | 75.82 |
| Solyc08g076540.2.1 | Tomato | nucleus | 74.19 | 75.82 |
| KRH74378 | Soybean | cytosol | 73.84 | 75.46 |
| PGSC0003DMT400038357 | Potato | cytosol | 73.48 | 75.09 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 73.48 | 75.09 |
| Solyc06g062360.2.1 | Tomato | cytosol | 73.48 | 75.09 |
| Solyc08g005200.2.1 | Tomato | cytosol | 72.76 | 74.36 |
| Solyc11g066910.1.1 | Tomato | plastid | 72.4 | 73.99 |
| AT5G46860.1 | Thale cress | cytosol | 70.61 | 73.51 |
| Bra024989.1-P | Field mustard | cytosol | 68.82 | 71.11 |
| CDY33485 | Canola | cytosol | 68.82 | 71.11 |
| EES02705 | Sorghum | cytosol | 71.33 | 71.07 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 69.53 | 71.06 |
| CDX77702 | Canola | cytosol | 68.82 | 70.85 |
| Os01t0254900-01 | Rice | plasma membrane | 70.97 | 70.71 |
| Bra022073.1-P | Field mustard | cytosol | 67.38 | 70.41 |
| CDY37158 | Canola | cytosol | 67.38 | 70.41 |
| Bra023256.1-P | Field mustard | cytosol | 66.31 | 70.34 |
| CDY01290 | Canola | cytosol | 67.74 | 70.26 |
| CDY43620 | Canola | cytosol | 67.03 | 70.04 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 69.53 | 70.04 |
| CDX93845 | Canola | cytosol | 65.95 | 69.96 |
| VIT_16s0039g01850.t01 | Wine grape | cytosol | 69.53 | 69.78 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 69.18 | 69.68 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 69.18 | 69.68 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 68.1 | 69.6 |
| CDX90452 | Canola | cytosol | 68.46 | 68.7 |
| CDX78796 | Canola | cytosol | 67.74 | 68.48 |
| Bra040178.1-P | Field mustard | cytosol | 67.74 | 68.48 |
| Bra012645.1-P | Field mustard | cytosol | 68.1 | 68.35 |
| CDY01478 | Canola | cytosol | 66.31 | 66.79 |
| CDY60786 | Canola | cytosol | 64.87 | 66.3 |
| AT4G17730.2 | Thale cress | cytosol | 60.57 | 64.5 |
| CDY38084 | Canola | cytosol | 43.73 | 61.93 |
| PGSC0003DMT400068230 | Potato | cytosol | 67.03 | 61.72 |
| CDY16976 | Canola | cytosol, plastid | 60.93 | 61.59 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 60.57 | 61.23 |
| CDX78712 | Canola | cytosol, plastid | 60.57 | 61.23 |
| CDX70720 | Canola | cytosol, plastid | 59.86 | 60.51 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 60.22 | 60.22 |
| CDX69417 | Canola | cytosol, plastid | 59.86 | 59.86 |
| Zm00001d040286_P003 | Maize | cytosol | 63.08 | 58.86 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 56.63 | 56.63 |
| Solyc06g072760.2.1 | Tomato | cytosol | 55.2 | 54.42 |
| PGSC0003DMT400045973 | Potato | cytosol | 24.01 | 50.0 |
| Zm00001d008333_P003 | Maize | cytosol | 53.05 | 45.54 |
| Zm00001d039536_P001 | Maize | cytosol | 40.5 | 42.97 |
| PGSC0003DMT400069241 | Potato | cytosol | 40.14 | 42.11 |
| GSMUA_Achr7P22600_001 | Banana | cytosol | 21.51 | 35.5 |
| AT1G32270.1 | Thale cress | nucleus | 51.25 | 34.38 |
| CDY03181 | Canola | cytosol | 30.11 | 32.18 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr5G04090_001 | EnsemblPlants:GSMUA_Achr5P04090_001 | EnsemblPlants:GSMUA_Achr5T04090_001 | InterPro:IPR000727 |
| UniProt:M0SVI8 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF138 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000295774F | SEG:seg | : |
Description
Syntaxin-22 [Source:GMGC_GENE;Acc:GSMUA_Achr5G04090_001]
Coordinates
chr5:-:2922931..2928848
Molecular Weight (calculated)
30356.3 Da
IEP (calculated)
5.221
GRAVY (calculated)
-0.189
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQDLESGR PLSGKRGRDS MQNGGGGGKD PTQAVVAGVF QINTAVSTFQ RLVNTLGTPK DTPELRERLH KTRLDIRQLV KDTAAELKQA SETDHHAEVS
101: TSKKIADAKL AKDFQAILKE FQKAQRIAAE RETAYIPFVP QAVLPSSYAS SGVDGSSDKT FEACSMLAES RRQEGLLLDT EIVLNEAIIE EREQGIQEIQ
201: QQISEVNEIF KDLAVLVHDQ GAMIDDIDSH IDNSLAAAVQ AKTQLTKASK AQKSNSSLTC LLLVIFGIVL LIVIIILAA
101: TSKKIADAKL AKDFQAILKE FQKAQRIAAE RETAYIPFVP QAVLPSSYAS SGVDGSSDKT FEACSMLAES RRQEGLLLDT EIVLNEAIIE EREQGIQEIQ
201: QQISEVNEIF KDLAVLVHDQ GAMIDDIDSH IDNSLAAAVQ AKTQLTKASK AQKSNSSLTC LLLVIFGIVL LIVIIILAA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.