Factsheet for GSMUA_Achr10P29490_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

extracellular 2
golgi 1
plasma membrane 2
endoplasmic reticulum 1
vacuole 1
mitochondrion 3
cytosol 2
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P24640_001
GSMUA_Achr8P19570_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52100.1	GSMUA_Achr10P...	AT5G01210.1	21798944
AT1G52100.1	GSMUA_Achr8P19570_001	AT5G01210.1	21798944
AT1G52100.1	GSMUA_AchrUn_...	AT5G01210.1	21798944
AT2G25980.1	GSMUA_Achr10P...	AT2G25980.1	21798944
AT2G25980.1	GSMUA_Achr1P24640_001	AT3G01180.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77840	Canola	cytosol	10.07	15.79
CDY21999	Canola	extracellular	17.45	15.03
CDX93274	Canola	cytosol	21.48	14.22
AT5G49860.1	Thale cress	cytosol, plastid	20.13	13.57
Bra021178.1-P	Field mustard	cytosol, nucleus, plastid	16.78	13.37
CDY20197	Canola	cytosol	16.78	12.14
CDY06998	Canola	cytosol	16.78	12.02
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	16.78	11.96
AT3G16450.2	Thale cress	cytosol	21.48	10.67
CDY72239	Canola	cytosol	22.15	10.61
CDY45640	Canola	cytosol	20.13	9.77
AT3G16440.2	Thale cress	cytosol	20.81	9.6
AT3G16420.1	Thale cress	cytosol	18.79	9.4
CDY13177	Canola	extracellular	19.46	9.18
AT3G16430.2	Thale cress	cytosol	18.12	9.12
GSMUA_Achr4P29370_001	Banana	cytosol	6.04	9.09
AT1G52060.1	Thale cress	extracellular	18.79	8.92
CDY28362	Canola	cytosol, nucleus, plastid	12.75	8.76
AT1G52070.1	Thale cress	extracellular	18.12	8.57
CDX90860	Canola	cytosol	22.15	8.55
Bra001631.1-P	Field mustard	cytosol	16.78	8.42
CDX82402	Canola	cytosol, plasma membrane	16.78	8.42
AT1G52050.1	Thale cress	extracellular	17.45	8.31
AT5G35940.1	Thale cress	cytosol	24.16	8.11
CDY54394	Canola	cytosol	5.37	8.0
AT5G35950.1	Thale cress	cytosol	23.49	7.88
Bra021177.1-P	Field mustard	nucleus	15.44	7.72
GSMUA_Achr7P06430_001	Banana	plastid	7.38	7.59
AT2G25980.1	Thale cress	cytosol	22.82	7.57
AT5G28520.1	Thale cress	cytosol	22.82	7.51
CDY65744	Canola	peroxisome	14.09	7.39
GSMUA_AchrUn_...	Banana	cytosol	6.04	7.38
CDX79175	Canola	cytosol	14.77	7.24
Bra026177.1-P	Field mustard	cytosol	14.09	7.17
CDY45301	Canola	cytosol	14.09	7.17
CDY53520	Canola	cytosol	14.09	7.17
AT1G52100.1	Thale cress	cytosol	20.81	7.09
Bra021179.1-P	Field mustard	cytosol	21.48	7.08
CDY70821	Canola	cytosol	20.81	6.92
AT3G16470.1	Thale cress	cytosol	20.81	6.87
Bra000129.1-P	Field mustard	cytosol	20.81	6.83
CDY07657	Canola	cytosol	20.81	6.83
CDY24969	Canola	cytosol	20.81	6.83
Bra005053.1-P	Field mustard	cytosol	20.81	6.78
CDX74856	Canola	cytosol	20.81	6.74
Bra018942.1-P	Field mustard	cytosol	16.78	6.58
CDX93273	Canola	cytosol	20.13	6.58
Bra017082.1-P	Field mustard	cytosol	19.46	6.56
CDY07000	Canola	cytosol	19.46	6.56
Bra001632.1-P	Field mustard	cytosol	10.74	6.56
AT2G39310.4	Thale cress	cytosol	20.13	6.55
AT2G39330.2	Thale cress	cytosol	21.48	6.31
AT3G21380.1	Thale cress	cytosol	19.46	6.3
Bra022161.1-P	Field mustard	cytosol	18.79	6.22
CDY38589	Canola	cytosol	18.79	6.11
CDY59556	Canola	cytosol	18.12	6.04
Bra017083.1-P	Field mustard	cytosol	14.77	6.03
CDX93275	Canola	cytosol	18.12	6.03
CDY06997	Canola	cytosol	18.12	6.03
CDX82401	Canola	cytosol	10.74	6.02
Bra021176.1-P	Field mustard	cytosol	18.79	6.0
CDY70857	Canola	cytosol	16.78	5.97
Bra013639.1-P	Field mustard	cytosol	18.79	5.82
CDY02548	Canola	cytosol	16.78	5.75
CDX82963	Canola	cytosol	16.11	5.73
GSMUA_Achr9P10840_001	Banana	cytosol	5.37	5.63
CDX75882	Canola	cytosol	10.74	5.59
GSMUA_Achr1P05130_001	Banana	cytosol	7.38	5.58
Bra018941.1-P	Field mustard	cytosol	16.11	5.54
CDY22879	Canola	cytosol	16.11	5.54
CDY44637	Canola	cytosol, mitochondrion, plastid	13.42	5.54
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	20.81	5.51
AT1G52120.2	Thale cress	cytosol	16.78	5.45
AT1G52040.1	Thale cress	cytosol	16.78	5.41
Bra023885.1-P	Field mustard	nucleus	19.46	5.37
Bra013637.1-P	Field mustard	cytosol	16.78	5.34
CDX92074	Canola	cytosol	22.82	5.23
GSMUA_Achr8P20690_001	Banana	plastid	6.71	5.21
AT1G52110.1	Thale cress	mitochondrion	21.48	5.2
CDY20195	Canola	cytosol	14.77	5.19
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	6.71	5.18
GSMUA_Achr9P10720_001	Banana	cytosol	6.04	5.17
AT5G49870.1	Thale cress	cytosol	20.81	5.16
AT1G61230.1	Thale cress	cytosol	17.45	5.15
Bra022160.1-P	Field mustard	cytosol	22.82	5.04
Bra030443.1-P	Field mustard	cytosol	24.83	4.99
CDY43910	Canola	cytosol	24.83	4.99
CDY32783	Canola	cytosol	17.45	4.97
GSMUA_Achr3P20760_001	Banana	extracellular	6.71	4.9
CDY43099	Canola	cytosol	22.15	4.87
AT5G49850.1	Thale cress	cytosol	19.46	4.87
AT1G60130.1	Thale cress	cytosol	19.46	4.83
AT1G60095.1	Thale cress	cytosol	19.46	4.83
CDY60590	Canola	cytosol	18.79	4.79
CDY69096	Canola	cytosol	18.79	4.79
AT3G16460.1	Thale cress	cytosol	22.15	4.68
AT1G60110.2	Thale cress	cytosol	19.46	4.66
Bra018945.1-P	Field mustard	cytosol	16.11	4.55
AT5G46000.1	Thale cress	cytosol	12.08	4.55
CDY68611	Canola	cytosol	8.05	4.53
CDY47758	Canola	cytosol	16.11	4.52
GSMUA_Achr8P15120_001	Banana	cytosol	4.03	4.51
Bra027095.1-P	Field mustard	cytosol	17.45	4.42
Bra014308.1-P	Field mustard	cytosol	21.48	4.37
AT1G52030.2	Thale cress	cytosol	18.79	4.36
AT1G57570.1	Thale cress	mitochondrion	17.45	4.23
AT5G38550.1	Thale cress	cytosol	16.78	4.21
AT1G33790.2	Thale cress	cytosol	20.81	4.16
Bra014309.1-P	Field mustard	cytosol	22.82	3.98
GSMUA_Achr9P10790_001	Banana	cytosol	5.37	3.9
CDY51197	Canola	cytosol	23.49	3.9
CDY59365	Canola	cytosol	20.81	3.88
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	6.71	3.65
CDY28360	Canola	cytosol	4.03	3.53
GSMUA_AchrUn_...	Banana	cytosol	6.71	3.5
CDX87871	Canola	cytosol	21.48	3.48
CDY51196	Canola	cytosol	21.48	3.44
CDY02564	Canola	cytosol	21.48	3.42
CDY51195	Canola	cytosol, extracellular	24.16	3.38
AT1G52130.1	Thale cress	cytosol	10.74	3.31
CDY02563	Canola	cytosol, extracellular	23.49	3.3
GSMUA_Achr9P10830_001	Banana	cytosol	5.37	3.28
CDY22878	Canola	cytosol	20.81	3.16
Bra002818.1-P	Field mustard	cytosol	18.12	3.15
Bra030402.1-P	Field mustard	cytosol	22.15	3.08
AT1G52000.2	Thale cress	cytosol	14.77	3.01
Bra014231.1-P	Field mustard	cytosol	20.81	2.96
Bra014307.1-P	Field mustard	cytosol	16.78	2.86
Bra018940.1-P	Field mustard	cytosol	20.81	2.63
CDY46535	Canola	cytosol	6.04	2.34
CDY53442	Canola	cytosol	6.04	2.28
Bra014306.1-P	Field mustard	cytosol	6.04	2.2
AT5G38540.1	Thale cress	cytosol	6.71	2.14
CDY40959	Canola	cytosol	6.04	1.76
CDY06999	Canola	cytosol	3.36	1.57
CDY47825	Canola	cytosol	6.71	1.26
CDY47824	Canola	cytosol	2.68	1.12
Bra017017.1-P	Field mustard	cytosol	2.01	0.88
CDY34134	Canola	cytosol	0.0	0.0
CDY43090	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P29490_001	EnsemblPlants:GSMUA_Achr10T29490_001	EnsemblPlantsGene:GSMUA_Achr10G29490_001	Gene3D:2.100.10.30	InterPro:IPR001229	InterPro:IPR036404
InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_sf	PANTHER:PTHR23244	PANTHER:PTHR23244:SF249	PFAM:PF01419	PFscan:PS51752
SEG:seg	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI00029504B4	UniProt:M0RMH3	MapMan:35.1

Description

Putative Myrosinase-binding protein-like At2g25980 [Source:GMGC_GENE;Acc:GSMUA_Achr10G29490_001]

Coordinates

chr10:+:31993272..31994439

Molecular Weight (calculated)

16225.0 Da

IEP (calculated)

7.159

GRAVY (calculated)

-0.403

Length

149 amino acids

Sequence
(BLAST)

001: MIIGFHGRSG WYIDSVSVHA LKGKVPSTYV EEKIIGFSML TLYEHKIFQV TYGLIKEPTP SGPGPWGGDG GKPWDDGVYS GTKQVHITRG DAINSVQIEY
101: DRSGQSVWSA RHGSSGETSH QVKFDYPNEI LNCISGYTAP STIATGSRS

Best Arabidopsis Sequence Match ( AT1G19715.2 )
(BLAST)

001: MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT ICVRSLTFES NRRKYGPFGV DSGTFFALPK
101: SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE
201: KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI
301: KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH NNSGTAQIEN SPWANKLVLA ANGHGEEVDR
401: GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT HRIKFEYPDE SITCISGYYG PLNNSDRYNV
501: VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL F

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.