Factsheet for Bra023885.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2
unclear 1
plastid 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY59556	Canola	cytosol	81.67	98.66
Bra026177.1-P	Field mustard	cytosol	50.74	93.52
AT3G21380.1	Thale cress	cytosol	73.7	86.52
Bra001632.1-P	Field mustard	cytosol	20.0	44.26
Bra022161.1-P	Field mustard	cytosol	36.48	43.78
Bra021177.1-P	Field mustard	nucleus	23.7	42.95
Bra001631.1-P	Field mustard	cytosol	22.96	41.75
Bra021176.1-P	Field mustard	cytosol	35.56	41.11
Bra021179.1-P	Field mustard	cytosol	34.26	40.93
Bra021178.1-P	Field mustard	cytosol, nucleus, plastid	13.89	40.11
Bra005053.1-P	Field mustard	cytosol	33.89	40.04
Bra000129.1-P	Field mustard	cytosol	33.33	39.65
Bra018941.1-P	Field mustard	cytosol	29.63	36.95
Bra017082.1-P	Field mustard	cytosol	28.89	35.29
Bra018942.1-P	Field mustard	cytosol	24.63	35.0
Bra017083.1-P	Field mustard	cytosol	23.52	34.79
Bra017017.1-P	Field mustard	cytosol	18.7	29.53
Bra013637.1-P	Field mustard	cytosol	25.56	29.49
Bra027095.1-P	Field mustard	cytosol	32.04	29.42
Bra013639.1-P	Field mustard	cytosol	25.93	29.11
Bra022160.1-P	Field mustard	cytosol	34.44	27.6
Bra018945.1-P	Field mustard	cytosol	24.26	24.86
Bra014306.1-P	Field mustard	cytosol	18.33	24.15
Bra030443.1-P	Field mustard	cytosol	32.59	23.72
Bra014308.1-P	Field mustard	cytosol	30.37	22.37
Bra008068.1-P	Field mustard	cytosol	6.67	20.45
Bra016496.1-P	Field mustard	cytosol	21.48	19.9
Bra025760.1-P	Field mustard	extracellular	22.22	19.77
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.37	19.46
Bra014309.1-P	Field mustard	cytosol	30.74	19.44
Bra002818.1-P	Field mustard	cytosol	29.63	18.69
Bra014307.1-P	Field mustard	cytosol	25.56	15.77
Bra030402.1-P	Field mustard	cytosol	29.07	14.66
Bra014231.1-P	Field mustard	cytosol	27.96	14.42
Bra018940.1-P	Field mustard	cytosol	30.37	13.91

Protein Annotations

EnsemblPlants:Bra023885.1	EnsemblPlants:Bra023885.1-P	EnsemblPlantsGene:Bra023885	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	PFAM:PF01419	PFscan:PS51752	SEG:seg	SMART:SM00915
SUPFAM:SSF51101	UniParc:UPI0002544549	UniProt:M4E531	MapMan:35.1	:	:

Description

AT3G21380 (E=2e-168) | LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: MBP1 (MYROSINASE-BINDING PROTEIN 1); protein binding (TAIR:AT1G52040.1); Has 1279 Blast hits to 507 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1276; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

Coordinates

chrA01:-:20790839..20793506

Molecular Weight (calculated)

58128.8 Da

IEP (calculated)

6.806

GRAVY (calculated)

-0.624

Length

540 amino acids

Sequence
(BLAST)

001: MAAATMSWDD GKHMRVKRVQ VTYEDVIKSI EAEYDDDQNP KRHGTPGKKS DGVSLSPDEY ITDVTGYYKT TGNEDAIAAL AFKTNKTQYG PYGNKTQNQF
101: SIHAPKDNQI AGFQGISSNV LNSIDVHFAP LPSSSPSDSS TLSSASQANK VDAQGGKGGT SWDDGAHDHV RKVYVGQGES SVSYVKFEYE KNGKKETREY
201: GKKTLLGAEV FEVDPDDYIT SVEVQSDRIF GQDTDVITCL IFKTAKGKTS PPFGLEGAQK YELKDKNGGK LVGFHGRAGE VLHALGAYFA PSSSTSSGGR
301: TSSSTQPAGS AAGAKKLEAK GGNAGNPWDD GPHDGVKKVY VGQGESGVSY VKFVYEKDSK EVPGNDHGKK TLLAPEERRR TLPATMAKKK PRKKPAPTRN
401: SPSSSPLKVS VPPIEDPVPE FNPATVLDLP SPSLGNTDCE VTLSPSLPTE LDVHLDLFVL DPNEYITAVE INYDNIFGTD SEIITMLRFT TNKRTSPPFG
501: LEGAKSVLLK EDGHKVVGFH GKAGADILHQ VGVHVKPISK

Best Arabidopsis Sequence Match ( AT3G21380.1 )
(BLAST)

001: MAAATMSWDD GKHMKVKRVQ ITYEDVINSI EAEYDGDTHN PHHHGTPGKK SDGVSLSPDE YITDVTGYYK TTGAEDAIAA LAFKTNKTEY GPYGNKTRNQ
101: FSIHAPKDNQ IAGFQGISSN VLNSIDVHFA PLPSSSSSSS SLSQANKVDA QGGKGGTSWD DGAHDHVRRV YIGQGDSGVT YVKFEYEKDD KKESREHGKK
201: TLLGAEVFEV DPDDYITSVE VQSDRIFGQD TEVITSLIFK TSKGKFSPPF GLEGSQKYEL KDKNGGKLVG FHGRVGGELL NALGAYFAPS SGRGTPSATQ
301: PPGSAQPTGS AGAKKLEAKG GNVGNPWDDG PHEGVRKVYI GQGDSGVSYV KFVYDKDSKE VPGNDHGKRT LLAPEEFLLE YPNEYITSVE LNYDKIFGTE
401: GEIITMLRFT TNKRTSPPFG LEGAKSVLLK EDGHKIVGFH GKAGADIIHQ VGVHVKPISK

Arabidopsis Description

JAL36Jacalin-related lectin 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.