CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53520	Canola	cytosol	60.4	92.15
CDY45301	Canola	cytosol	60.18	91.81
AT3G21380.1	Thale cress	cytosol	87.47	85.0
Bra023885.1-P	Field mustard	nucleus	98.66	81.67
CDY54394	Canola	cytosol	11.86	53.0
CDX93274	Canola	cytosol	24.83	49.33
CDY06998	Canola	cytosol	22.82	49.04
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	20.81	44.5
CDX90860	Canola	cytosol	36.47	42.23
CDY20195	Canola	cytosol	39.82	41.98
CDX82401	Canola	cytosol	24.83	41.73
CDX82402	Canola	cytosol, plasma membrane	27.52	41.41
CDY65744	Canola	peroxisome	25.5	40.14
CDX74856	Canola	cytosol	41.16	40.0
CDY21999	Canola	extracellular	15.44	39.88
CDY07657	Canola	cytosol	40.04	39.43
CDY24969	Canola	cytosol	39.82	39.21
CDY38589	Canola	cytosol	38.93	37.99
CDY20197	Canola	cytosol	17.23	37.38
CDY44637	Canola	cytosol, mitochondrion, plastid	29.98	37.12
CDX77840	Canola	cytosol	7.83	36.84
CDY02548	Canola	cytosol	35.79	36.78
CDY22879	Canola	cytosol	35.35	36.49
CDX93273	Canola	cytosol	37.14	36.4
CDY28362	Canola	cytosol, nucleus, plastid	17.45	35.94
CDY45640	Canola	cytosol	24.61	35.83
CDY06997	Canola	cytosol	35.57	35.49
CDY07000	Canola	cytosol	34.9	35.29
CDX93275	Canola	cytosol	34.45	34.38
CDY28360	Canola	cytosol	12.98	34.12
CDY68611	Canola	cytosol	19.69	33.21
CDX79175	Canola	cytosol	22.15	32.57
CDY72239	Canola	cytosol	22.37	32.15
CDX82963	Canola	cytosol	28.41	30.31
CDY70857	Canola	cytosol	28.41	30.31
CDX75882	Canola	cytosol	18.79	29.37
CDY06999	Canola	cytosol	20.81	29.25
CDY32783	Canola	cytosol	33.78	28.87
CDY13177	Canola	extracellular	20.36	28.8
CDY60590	Canola	cytosol	37.36	28.55
CDY47758	Canola	cytosol	33.78	28.44
CDY69096	Canola	cytosol	37.14	28.38
CDX92074	Canola	cytosol	40.72	28.0
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	34.0	27.0
CDY40959	Canola	cytosol	30.2	26.47
CDY43099	Canola	cytosol	39.82	26.29
CDY70821	Canola	cytosol	25.73	25.67
CDY46535	Canola	cytosol	21.25	24.68
CDY53442	Canola	cytosol	21.48	24.3
CDY43910	Canola	cytosol	38.93	23.45
CDY63700	Canola	cytosol	25.5	19.49
CDY59365	Canola	cytosol	33.11	18.55
CDX96652	Canola	extracellular	25.5	18.54
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	6.04	18.12
CDY51196	Canola	cytosol	36.69	17.63
CDY02564	Canola	cytosol	36.47	17.41
CDY51197	Canola	cytosol	34.68	17.26
CDY22878	Canola	cytosol	36.24	16.5
CDX87871	Canola	cytosol	33.56	16.32
CDY02563	Canola	cytosol, extracellular	36.47	15.38
CDY51195	Canola	cytosol, extracellular	36.24	15.23
CDY48032	Canola	cytosol, extracellular, nucleus	7.83	15.22
CDX82115	Canola	extracellular	8.05	14.4
CDY47825	Canola	cytosol	23.27	13.11
CDY43090	Canola	cytosol	7.61	12.27
CDY47824	Canola	cytosol	8.28	10.36
CDY34134	Canola	cytosol	2.01	4.33

Protein Annotations

EnsemblPlants:CDY59556	EnsemblPlantsGene:GSBRNA2T00027372001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PANTHER:PTHR23244
PANTHER:PTHR23244:SF208	PFAM:PF01419	PFscan:PS51752	ProteinID:CDY59556	ProteinID:CDY59556.1	SEG:seg
SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0004EDD5A5	UniProt:A0A078J5K9	MapMan:35.1	:

Description

BnaC01g43710DJacalin-related lectin 36 [Source:Projected from Arabidopsis thaliana (AT3G21380) UniProtKB/Swiss-Prot;Acc:Q9LIF8]

Coordinates

chrLK033778:+:35266..37584

Molecular Weight (calculated)

48286.0 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.635

Length

447 amino acids

Sequence
(BLAST)

001: MAAATMSWDD GKHMRVKRVQ VTYEDVIKSI EAEYDDDQNP KRHGTPGKKS DGVSLSPDEY ITDVTGYYKT TGNEDAIAAL AFKTNKTQYG PYGNKTQNQF
101: SIHAPKDNQI AGFQGISSNV LNSIDVHFAP LPSSSTSDSS TPSSASQANK VDAQGGKGGT SWDDGAHDHV RKVYVGQGES SVSYVKFEYE KNGKKETREY
201: GKKTLLGSEV FEVDPDDYIT SAEVQSDRIF GQDTDVITCL IFKTAKGKTS PPFGLEGAQK YELKDKNGGK LVGFHGRAGE VLHALGAYFA PSSSTSSAAG
301: AKKLEAKGGN AGNPWDDGPH DGVKKVYVGQ GESGVSYVKF VYEKDSKEVP GNDHGKKTLL APEEFVLDPN EYITAVEINY DNIFGTESEI ITMLRFTTNK
401: RTSPPFGLEG AKSVLLKEDG HKVVGFHGKA GADILHQVGV HVKAISK

Best Arabidopsis Sequence Match ( AT3G21380.1 )
(BLAST)

001: MAAATMSWDD GKHMKVKRVQ ITYEDVINSI EAEYDGDTHN PHHHGTPGKK SDGVSLSPDE YITDVTGYYK TTGAEDAIAA LAFKTNKTEY GPYGNKTRNQ
101: FSIHAPKDNQ IAGFQGISSN VLNSIDVHFA PLPSSSSSSS SLSQANKVDA QGGKGGTSWD DGAHDHVRRV YIGQGDSGVT YVKFEYEKDD KKESREHGKK
201: TLLGAEVFEV DPDDYITSVE VQSDRIFGQD TEVITSLIFK TSKGKFSPPF GLEGSQKYEL KDKNGGKLVG FHGRVGGELL NALGAYFAPS SGRGTPSATQ
301: PPGSAQPTGS AGAKKLEAKG GNVGNPWDDG PHEGVRKVYI GQGDSGVSYV KFVYDKDSKE VPGNDHGKRT LLAPEEFLLE YPNEYITSVE LNYDKIFGTE
401: GEIITMLRFT TNKRTSPPFG LEGAKSVLLK EDGHKIVGFH GKAGADIIHQ VGVHVKPISK

Arabidopsis Description

JAL36Jacalin-related lectin 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.