CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014309.1-P	Field mustard	cytosol	78.21	97.07
CDY51195	Canola	cytosol, extracellular	93.3	92.95
CDY51196	Canola	cytosol	76.6	87.31
CDY02564	Canola	cytosol	76.89	87.07
CDY51197	Canola	cytosol	71.51	84.41
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	40.66	76.55
CDY47825	Canola	cytosol	52.36	69.99
CDY46535	Canola	cytosol	24.53	67.53
CDY53442	Canola	cytosol	25.0	67.09
CDY32783	Canola	cytosol	31.6	64.05
CDY22879	Canola	cytosol	25.66	62.82
CDY47758	Canola	cytosol	31.42	62.71
AT1G52030.2	Thale cress	cytosol	36.23	59.81
CDY65744	Canola	peroxisome	15.28	57.04
CDY20195	Canola	cytosol	20.75	51.89
CDX74856	Canola	cytosol	18.21	41.96
CDX93274	Canola	cytosol	8.68	40.89
CDY07657	Canola	cytosol	17.45	40.75
CDY24969	Canola	cytosol	17.36	40.53
CDX90860	Canola	cytosol	14.72	40.41
CDY06999	Canola	cytosol	11.98	39.94
CDX93273	Canola	cytosol	17.17	39.91
CDY54394	Canola	cytosol	3.68	39.0
CDY07000	Canola	cytosol	16.23	38.91
CDY06997	Canola	cytosol	16.42	38.84
CDX93275	Canola	cytosol	16.42	38.84
CDY06998	Canola	cytosol	7.45	37.98
CDY38589	Canola	cytosol	16.04	37.12
CDX82402	Canola	cytosol, plasma membrane	10.38	37.04
CDY02548	Canola	cytosol	15.0	36.55
CDY59556	Canola	cytosol	15.38	36.47
CDY70821	Canola	cytosol	15.28	36.16
CDY20197	Canola	cytosol	6.89	35.44
CDX82401	Canola	cytosol	8.87	35.34
CDY28360	Canola	cytosol	5.57	34.71
CDY44637	Canola	cytosol, mitochondrion, plastid	11.7	34.35
CDY45640	Canola	cytosol	9.91	34.2
CDY13177	Canola	extracellular	10.19	34.18
CDX82963	Canola	cytosol	13.21	33.41
CDY70857	Canola	cytosol	13.21	33.41
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	6.51	33.01
CDY53520	Canola	cytosol	9.06	32.76
CDY45301	Canola	cytosol	9.06	32.76
CDY28362	Canola	cytosol, nucleus, plastid	6.7	32.72
CDY21999	Canola	extracellular	5.09	31.21
CDY72239	Canola	cytosol	8.77	29.9
CDY68611	Canola	cytosol	7.45	29.81
CDX77840	Canola	cytosol	2.55	28.42
CDX75882	Canola	cytosol	7.64	28.32
CDX79175	Canola	cytosol	7.92	27.63
CDY60590	Canola	cytosol	15.09	27.35
CDY69096	Canola	cytosol	15.0	27.18
CDY40959	Canola	cytosol	13.02	27.06
CDY22878	Canola	cytosol	24.53	26.48
CDX92074	Canola	cytosol	15.47	25.23
CDY63700	Canola	cytosol	13.21	23.93
CDY43099	Canola	cytosol	15.19	23.78
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	3.3	23.49
CDX96652	Canola	extracellular	13.3	22.93
CDY43910	Canola	cytosol	15.94	22.78
CDX87871	Canola	cytosol	18.77	21.65
CDY48032	Canola	cytosol, extracellular, nucleus	4.43	20.43
CDY59365	Canola	cytosol	14.81	19.67
CDX82115	Canola	extracellular	4.25	18.0
CDY47824	Canola	cytosol	5.0	14.85
CDY43090	Canola	cytosol	3.87	14.8
CDY34134	Canola	cytosol	1.04	5.29

Protein Annotations

Gene3D:2.100.10.30	Gene3D:2.120.10.80	MapMan:9.5.2.2	EnsemblPlants:CDY02563	ProteinID:CDY02563	ProteinID:CDY02563.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00114247001
InterPro:IPR001229	InterPro:IPR015915	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PFAM:PF01344	PFAM:PF01419	PFAM:PF07646
PFAM:PF13964	PFscan:PS51752	PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF117281
SUPFAM:SSF51101	UniParc:UPI0004EF1291	SEG:seg	:	:	:

Description

BnaA08g01700D

Coordinates

chrLK031935:+:1121306..1125716

Molecular Weight (calculated)

115679.0 Da

IEP (calculated)

6.345

GRAVY (calculated)

-0.335

Length

1060 amino acids

Sequence
(BLAST)

0001: MNTMSEKVGA VGGNKGGPFD DGVFDGVKKI IVGKDFNSVS YIKIEYEKDG KFETREHGTI RGELQEFTVD YPNEYITSVG GSYELVLCYG TVLIRSLIFK
0101: TSYKRTSPIF GHTTLFGHPA GREFMLEGKN GGRLLGFHGR SGQALDAIGA HFFSVKSPLK HFNLQGGNGG SAWDDGAYDG VRKILVGRGS KFVSYVRFEY
0201: AKGQGMVPHA HGKKQEAPQE FVVDYPNEQI TLVEGTIDGY LTSLRFKTSK GRTSPAFGNV VGRKFVFEEK DFKLVGFCGR SGDAIDALGA HFAPLPPPPP
0301: APAPTPDPAT SKMGPLGGDK GNTFDDGVLD GVKKVTIGAD EYSITYIKIE YENDGKLEVR EHGTNRGELK EFSVAYPNEY IIAVGGSYKH IFNYDTTLIT
0401: SLYFTTSKGL TSPLFGEVKG TEFEFKDENG GNLVGFHGRG GYAIDAIGVH FAPAPNSSIP TPPNKLSKVY ITSGNEGIEE INFYNVENGV TKEVFLHGVK
0501: GKNLISTIVI SNPPDECLVS VESWYNSYNV SQGIKFKTDT KGSDFFGYKF SEDTGRPFSL QVKGKKIIGV QKFPDLNLIS PGTYFVLSRS SSPDKVEAIG
0601: GKGGETFDDG AFNHVRKVFV GKGDSGIAYV KFDYEKDGRI VTQEHGQKTS QETEVFEVGQ DDDITSVKAY YETLDGSKTE TITYLAFKTL KGINSQPFGK
0701: TPVIVNENTK LSLLEGGKIT GFHGSSTDVL HSIGAYISAS PPTMLHGKWI QVEQNGQTPG PRCSHAIAMV GNKMYAFGGE LKPNFHIDRD LYFFDFETHR
0801: WSLADPDGDV PELPCLGVCM VAIGTTLYVF GGRDGLRNYN GFYSYDTVKS EWKLITHVNN GPAPRSFHSM AADGNNIYIF GGVTTKERVN TLHAYNIVDQ
0901: KWTELPNPGE SCNGRGGAGL AVVQGKIWVV YGFIGEEVED VHCFDPVESK WTKVETRGEK PWARSVFALA VVGKYIIISG GEIEMDVKAH LGPGSLTGGA
1001: FVLDTESLVW EKLEEGHSPR GWIASTTASI DGKKGLLMYG GKAPTNGRYE DIYFYGVDSA

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.