CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53442	Canola	cytosol	95.84	93.42
Bra014306.1-P	Field mustard	cytosol	97.4	91.46
CDY32783	Canola	cytosol	56.36	41.49
CDY65744	Canola	peroxisome	30.39	41.2
CDY47758	Canola	cytosol	56.62	41.05
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	57.92	39.61
CDY06999	Canola	cytosol	30.65	37.11
CDY22879	Canola	cytosol	39.48	35.1
AT1G52030.2	Thale cress	cytosol	58.44	35.05
CDY20195	Canola	cytosol	37.92	34.43
CDY51197	Canola	cytosol	71.69	30.73
CDY06997	Canola	cytosol	34.81	29.91
CDX93275	Canola	cytosol	34.29	29.46
CDX93273	Canola	cytosol	34.55	29.17
CDX74856	Canola	cytosol	34.29	28.7
CDY47825	Canola	cytosol	58.96	28.63
CDY07657	Canola	cytosol	33.51	28.41
CDY51196	Canola	cytosol	68.57	28.39
CDY02564	Canola	cytosol	67.79	27.88
CDY24969	Canola	cytosol	32.73	27.75
CDY07000	Canola	cytosol	30.91	26.92
CDY38589	Canola	cytosol	31.17	26.2
CDY44637	Canola	cytosol, mitochondrion, plastid	24.16	25.76
CDY20197	Canola	cytosol	13.77	25.73
CDX90860	Canola	cytosol	25.45	25.39
CDY51195	Canola	cytosol, extracellular	69.35	25.09
CDY02563	Canola	cytosol, extracellular	67.53	24.53
CDY70857	Canola	cytosol	26.49	24.34
CDX82963	Canola	cytosol	26.49	24.34
CDY02548	Canola	cytosol	26.75	23.68
CDY28362	Canola	cytosol, nucleus, plastid	12.47	22.12
CDY59556	Canola	cytosol	24.68	21.25
CDY28360	Canola	cytosol	9.09	20.59
CDY40959	Canola	cytosol	25.71	19.41
CDY48032	Canola	cytosol, extracellular, nucleus	11.43	19.13
CDY45640	Canola	cytosol	14.81	18.57
CDY69096	Canola	cytosol	27.27	17.95
CDY60590	Canola	cytosol	27.27	17.95
CDX93274	Canola	cytosol	10.39	17.78
CDX82402	Canola	cytosol, plasma membrane	13.51	17.51
CDY68611	Canola	cytosol	11.69	16.98
CDX82115	Canola	extracellular	10.91	16.8
CDX75882	Canola	cytosol	12.47	16.78
CDX82401	Canola	cytosol	11.43	16.54
CDY72239	Canola	cytosol	13.25	16.4
CDX87871	Canola	cytosol	38.18	16.0
CDX77840	Canola	cytosol	3.9	15.79
CDY63700	Canola	cytosol	23.9	15.73
CDX92074	Canola	cytosol	26.49	15.69
CDY06998	Canola	cytosol	8.31	15.38
CDY43090	Canola	cytosol	10.91	15.16
CDY43910	Canola	cytosol	29.09	15.09
CDY43099	Canola	cytosol	26.49	15.07
CDY22878	Canola	cytosol	38.18	14.97
CDX96652	Canola	extracellular	23.9	14.96
CDY13177	Canola	extracellular	12.21	14.87
CDX79175	Canola	cytosol	11.69	14.8
CDY70821	Canola	cytosol	15.58	13.39
CDY45301	Canola	cytosol	9.87	12.97
CDY47824	Canola	cytosol	11.95	12.89
CDY53520	Canola	cytosol	9.61	12.63
CDY59365	Canola	cytosol	23.12	11.15
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	2.34	6.04
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	3.12	5.74
CDY34134	Canola	cytosol	2.86	5.29
CDY21999	Canola	extracellular	2.08	4.62
CDY54394	Canola	cytosol	0.52	2.0

Protein Annotations

EnsemblPlants:CDY46535	EnsemblPlantsGene:GSBRNA2T00085747001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PANTHER:PTHR23244
PANTHER:PTHR23244:SF208	PFAM:PF01419	PFscan:PS51752	ProteinID:CDY46535	ProteinID:CDY46535.1	SEG:seg
SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0004EE5A21	UniProt:A0A078I6M0	MapMan:35.1	:

Description

BnaA08g01740DBnaA08g01740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6M0]

Coordinates

chrLK032675:+:21545..22887

Molecular Weight (calculated)

40480.7 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.384

Length

385 amino acids

Sequence
(BLAST)

001: MGTMSERVGA MGGNMGSPFD DGVFDGVRRI IVGRDWDCVS YIKIEYENSA GNFETREHGT NRGGIQEFTV DYPSEYITSV GGSFSRVFRY GTELIQSLIF
101: RTSRGRTSPI LGHSFLGFQL GTRFTLEGKN GGKLLGFHGR SGQALDAIGP YFFAANPPLR HFNPEGGNGG SAWDDGAFDG VRRILVGRGG RFVSFLRFEY
201: ARGQRTVPHD HGRRQEVPQE FVVDHPNEHI TVVEGTIDGF LTSLRFQTSI GRTSPAFGNV VGRRFVFQEN NFKLVGFSGR SGDVIDALGA NFGPLPAPTP
301: IPAPVPAPAP RPSPAPAPAP RPSPAPGPAG RWPPAPAPAP APGPAPAPGP APAPGPAPGQ GPAPGRAPGP APGRAPGPAP GPAGR

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.