CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02563	Canola	cytosol, extracellular	92.95	93.3
Bra014309.1-P	Field mustard	cytosol	73.4	91.45
CDY51196	Canola	cytosol	76.79	87.85
CDY02564	Canola	cytosol	76.69	87.18
CDY51197	Canola	cytosol	71.05	84.19
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	40.79	77.09
CDY47825	Canola	cytosol	51.97	69.74
CDY46535	Canola	cytosol	25.09	69.35
CDY53442	Canola	cytosol	25.56	68.86
CDY32783	Canola	cytosol	31.58	64.24
CDY47758	Canola	cytosol	31.48	63.09
CDY22879	Canola	cytosol	25.47	62.59
AT1G52030.2	Thale cress	cytosol	36.18	59.97
CDY65744	Canola	peroxisome	15.13	56.69
CDY20195	Canola	cytosol	20.49	51.42
CDX74856	Canola	cytosol	18.05	41.74
CDY07657	Canola	cytosol	17.48	40.97
CDX90860	Canola	cytosol	14.85	40.93
CDY24969	Canola	cytosol	17.39	40.75
CDX93274	Canola	cytosol	8.46	40.0
CDX93273	Canola	cytosol	17.01	39.69
CDY06999	Canola	cytosol	11.75	39.31
CDY06997	Canola	cytosol	16.54	39.29
CDX93275	Canola	cytosol	16.45	39.06
CDY07000	Canola	cytosol	15.98	38.46
CDY54394	Canola	cytosol	3.57	38.0
CDY06998	Canola	cytosol	7.33	37.5
CDY38589	Canola	cytosol	15.79	36.68
CDX82402	Canola	cytosol, plasma membrane	10.15	36.36
CDY59556	Canola	cytosol	15.23	36.24
CDX82401	Canola	cytosol	9.02	36.09
CDY70821	Canola	cytosol	15.13	35.94
CDY02548	Canola	cytosol	14.66	35.86
CDY20197	Canola	cytosol	6.86	35.44
CDY44637	Canola	cytosol, mitochondrion, plastid	11.84	34.9
CDY28360	Canola	cytosol	5.36	33.53
CDY13177	Canola	extracellular	9.87	33.23
CDY45640	Canola	cytosol	9.59	33.22
CDY21999	Canola	extracellular	5.36	32.95
CDY28362	Canola	cytosol, nucleus, plastid	6.67	32.72
CDY45301	Canola	cytosol	8.93	32.42
CDY53520	Canola	cytosol	8.93	32.42
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	6.3	32.06
CDY70857	Canola	cytosol	12.59	31.98
CDX82963	Canola	cytosol	12.59	31.98
CDX77840	Canola	cytosol	2.63	29.47
CDY68611	Canola	cytosol	7.33	29.43
CDY72239	Canola	cytosol	8.55	29.26
CDX75882	Canola	cytosol	7.8	29.02
CDY60590	Canola	cytosol	15.13	27.52
CDY69096	Canola	cytosol	15.04	27.35
CDX79175	Canola	cytosol	7.8	27.3
CDY40959	Canola	cytosol	13.06	27.25
CDY22878	Canola	cytosol	24.53	26.58
CDX92074	Canola	cytosol	15.6	25.54
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	3.38	24.16
CDY43099	Canola	cytosol	15.32	24.08
CDY63700	Canola	cytosol	12.97	23.59
CDY43910	Canola	cytosol	15.98	22.91
CDX96652	Canola	extracellular	12.97	22.44
CDX87871	Canola	cytosol	18.8	21.76
CDY48032	Canola	cytosol, extracellular, nucleus	4.42	20.43
CDY59365	Canola	cytosol	15.04	20.05
CDX82115	Canola	extracellular	4.32	18.4
CDY43090	Canola	cytosol	3.95	15.16
CDY47824	Canola	cytosol	4.98	14.85
CDY34134	Canola	cytosol	1.22	6.25

Protein Annotations

Gene3D:2.100.10.30	Gene3D:2.120.10.80	MapMan:9.5.2.2	UniProt:A0A078IJD6	EnsemblPlants:CDY51195	ProteinID:CDY51195
ProteinID:CDY51195.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00098410001
InterPro:IPR001229	InterPro:IPR015915	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	InterPro:Kelch_2	PFAM:PF01344	PFAM:PF01419	PFAM:PF07646
PFAM:PF13964	PFscan:PS51752	PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF117281
SUPFAM:SSF51101	UniParc:UPI0004EE0BDF	SEG:seg	:	:	:

Description

BnaC03g68970DBnaC03g68970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJD6]

Coordinates

chrLK032974:+:66120..70572

Molecular Weight (calculated)

116447.0 Da

IEP (calculated)

7.041

GRAVY (calculated)

-0.402

Length

1064 amino acids

Sequence
(BLAST)

0001: MNTTFEKVGA VGGNKGGPFD DGVFDGVKKI TVGKDWDCVS YIKIEYEKEK DGKFETREHG TIRGELQEFT VDYPNEYITS VGGSYEHVLS YGTVLIKSLR
0101: FKTSYGRTSP ILGRTTLFRN PAGREFMLEG KNGGKLLGFH GRSGQALDAI GAHFFAVKSP LKHFNLQGGN GGSAWDDGAF DGVRKILVGR GGKFVSYVRF
0201: EYAKGRGMVP HAHGKRQEVP QEFVVDYPNE HITVVEGTID GYLTSLRFKT SKGRTSPAFG NVVGRKFVFG EKDFKLVGFC GRSGDAIDAL GAHFAPLPPP
0301: PPAPAPAPTP DPSTTKMGPL GGDKGKTFDD GVLNGVKKVT IGADEYSITY IKIEYENNGK VEIREHGTNR GELKEFSVAY PNEYITAVGG SYKHIFNYDT
0401: TLITSLYCTT SKGSTSPLFG ELKGTEFEFK DENGGNLVGF HGRGGYAIDA IGVHFGPAPK SSTPTPPNKF SKVYITSGNE GIEEIKFYNV ENGETKEVFL
0501: HGVKGKNLIS TLVISNPPDE CLVSVESWYN SYDVSQGIKF KTEKSGSDFF GYKFSEDVGK PFSLQVKDKK IIGVQKFHDS NLISPGTYFV LSRSSSPNKV
0601: EAIGGKGGET FDDGAFDHVR KVFVAKGDSG IAYVKFEYEK DGRRVTQEHG QKTSQETEVF EVGQDDDITS VKAYYEKLDA SKTETITYLA FKTLKGVNSQ
0701: PFGKTPVIVN EQTKLSLLEG GKITGFHGSS TDVLHSIGAY ISTSPPTMLH GKWIQVEQNG KTPGPRCSHA IAMVGNKMYS FGGELKPNFH IDRDLYFFDF
0801: ETRRWSLADP DGDVPELPCL GVCMVAIGTT LYVFGGRDGF RNYNGFYSYD TVKSEWKLIT HVNNGPAPRS FHSMAADGNN IYIFGGVTTK ERVNTLHAYN
0901: IVDKKWTELP NPGESCKGRG GAGLAVVQGK IWVVYGFIGE EVEDVHCFDP VESKWTKVET RGEKPWARSV FALAVVGKYI IISGGEIEMD VKAHLGPGSL
1001: TGGAFVLDTE SLVWEKLEEG HSPRGWIAST STSIDGKKGL LMYGGKAPTN GRYEDIYFYG IDSA

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.