CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 26746009

msms PMID: 26746009 doi

S Chen, Y Luo, G Ding, F Xu

National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: fangsenxu@mail.hzau.edu.cn., National Key Laboratory of Crop Genetic Improvement, and Microelement Research Center, Huazhong Agricultural University, Wuhan 430070, China; Key Laboratory of Agricultural Biotechnology of Liaoning Province, College of Biological Science and Technology, Shenyang Agricultural University, Shenyang 110866, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001631.1-P	Field mustard	cytosol	100.0	100.0
CDY28362	Canola	cytosol, nucleus, plastid	60.27	82.49
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	56.9	80.86
AT3G16420.1	Thale cress	cytosol	79.12	78.86
CDX82401	Canola	cytosol	69.02	77.07
CDX75882	Canola	cytosol	63.97	66.43
CDY54394	Canola	cytosol	19.87	59.0
CDX77840	Canola	cytosol	14.48	45.26
CDY53520	Canola	cytosol	41.41	41.98
CDY45301	Canola	cytosol	41.08	41.64
CDY20197	Canola	cytosol	27.95	40.29
CDY13177	Canola	extracellular	42.09	39.56
CDY06998	Canola	cytosol	27.27	38.94
CDY28360	Canola	cytosol	22.22	38.82
CDX93274	Canola	cytosol	27.95	36.89
CDY21999	Canola	extracellular	21.21	36.42
CDX90860	Canola	cytosol	43.43	33.42
CDY02548	Canola	cytosol	45.12	30.8
CDY20195	Canola	cytosol	43.1	30.19
CDY07657	Canola	cytosol	45.79	29.96
CDY24969	Canola	cytosol	45.45	29.74
CDX74856	Canola	cytosol	45.79	29.57
CDX92074	Canola	cytosol	62.29	28.46
CDY43099	Canola	cytosol	62.96	27.62
CDY59556	Canola	cytosol	41.41	27.52
CDY38589	Canola	cytosol	41.41	26.86
CDY07000	Canola	cytosol	39.73	26.7
CDX93273	Canola	cytosol	40.07	26.1
CDY06997	Canola	cytosol	38.72	25.67
CDY69096	Canola	cytosol	49.49	25.13
CDY60590	Canola	cytosol	49.16	24.96
CDY43090	Canola	cytosol	23.23	24.91
CDY40959	Canola	cytosol	42.76	24.9
CDY22879	Canola	cytosol	36.03	24.71
CDX93275	Canola	cytosol	36.36	24.11
CDY43910	Canola	cytosol	54.21	21.7
CDY44637	Canola	cytosol, mitochondrion, plastid	25.25	20.78
CDX82963	Canola	cytosol	27.61	19.57
CDY47758	Canola	cytosol	34.01	19.02
CDY32783	Canola	cytosol	33.33	18.93
CDY70857	Canola	cytosol	26.6	18.85
CDX79175	Canola	cytosol	19.19	18.75
CDY59365	Canola	cytosol	46.46	17.29
CDY72239	Canola	cytosol	17.85	17.04
CDY65744	Canola	peroxisome	16.16	16.9
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	8.42	16.78
CDY06999	Canola	cytosol	17.85	16.67
CDY45640	Canola	cytosol	17.17	16.61
CDY68611	Canola	cytosol	14.81	16.6
CDY63700	Canola	cytosol	32.66	16.58
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	30.98	16.34
CDX96652	Canola	extracellular	33.0	15.94
CDY47824	Canola	cytosol	16.5	13.73
CDY46535	Canola	cytosol	17.51	13.51
CDY53442	Canola	cytosol	17.51	13.16
CDY70821	Canola	cytosol	18.86	12.5
CDY48032	Canola	cytosol, extracellular, nucleus	9.43	12.17
CDY51197	Canola	cytosol	35.35	11.69
CDY51196	Canola	cytosol	36.36	11.61
CDX82115	Canola	extracellular	9.76	11.6
CDY02564	Canola	cytosol	36.36	11.54
CDX87871	Canola	cytosol	33.67	10.88
CDY02563	Canola	cytosol, extracellular	37.04	10.38
CDY22878	Canola	cytosol	34.01	10.29
CDY51195	Canola	cytosol, extracellular	36.36	10.15
CDY34134	Canola	cytosol	5.05	7.21
CDY47825	Canola	cytosol	16.84	6.31

Protein Annotations

Gene3D:2.100.10.30	MapMan:35.1	EnsemblPlants:CDX82402	ProteinID:CDX82402	ProteinID:CDX82402.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009506	GO:GO:0030234	GO:GO:0030246
GO:GO:0051336	EnsemblPlantsGene:GSBRNA2T00137525001	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant
InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	SMART:SM00915
SUPFAM:SSF51101	UniParc:UPI0002540AC5	:	:	:	:

Description

BnaA03g34190D

Coordinates

chrLK031828:-:1021921..1023549

Molecular Weight (calculated)

31991.6 Da

IEP (calculated)

5.032

GRAVY (calculated)

-0.241

Length

297 amino acids

Sequence
(BLAST)

001: MAQKVEAQGG KGGIQWDDGS EHDAVTKIQV GAGGIGIQYI KFDYVKNGQS EEAPLRGVKG RSIAADPFVI NHPEEHLVSV EGWFNPDGLI QGLKFISNKK
101: TSDVIGYDDG THFTLQVQDK KIIGFHGSAG DYVNSLGAYF APLTSTPLTH AKKLPALGAD VGTAWDDGAY DGVKKVYVGQ AQDGISVVKF VYDKGAEDIV
201: GAEHGTSTLL GFEEFELDYP SEYITAVQGT YDKIFGSDAT VINMLRFKTN KQTSTPFGLE AGTAFELKEE GHKIVGFHGK VSDLLHQLGV YVLPVTN

Best Arabidopsis Sequence Match ( AT3G16430.2 )
(BLAST)

001: MAQKVEAKGG KGGNQWDDGS DHDAVTKIQV AVGGMGIQYI QFDYVKNGQT EQTPLRGIKG STIPTDPFVI NHPEEHLVSI EIWYKPDGLI QGLRFISNKK
101: TSRFIGYDRG TRSFLQVQDK KIIGFHGSAG DNLNSLGAYF APLTIPLTPA KPLPALGSDD GTAWDDGAYV GVKKVYVGQA QDGISAVKFV YDKSPEEVTG
201: EEHGKSTLLG FEEFVLDYPS EYIIAVEGTY DKIFGSDGSV ITMLRFKTNK QTSPPFGLEA GTAFELKEEG HKIVGFHGRA DALLHKIGVH VRPVSN

Arabidopsis Description

PBP2PYK10-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O04313]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.