CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018942.1-P	Field mustard	cytosol	82.04	61.32
CDY22879	Canola	cytosol	86.97	57.04
CDY45640	Canola	cytosol	35.56	32.9
CDY46535	Canola	cytosol	41.2	30.39
CDY53442	Canola	cytosol	41.2	29.62
CDY32783	Canola	cytosol	53.87	29.25
CDY47758	Canola	cytosol	53.52	28.63
CDY72239	Canola	cytosol	29.58	27.01
CDY20197	Canola	cytosol	19.37	26.7
CDY20195	Canola	cytosol	39.44	26.42
CDY59556	Canola	cytosol	40.14	25.5
CDY06999	Canola	cytosol	28.52	25.47
CDX93273	Canola	cytosol	39.44	24.56
CDX74856	Canola	cytosol	38.38	23.7
CDY07657	Canola	cytosol	37.68	23.57
CDY06997	Canola	cytosol	36.97	23.44
CDY24969	Canola	cytosol	37.32	23.35
CDX93275	Canola	cytosol	36.62	23.21
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	45.42	22.91
CDY07000	Canola	cytosol	35.56	22.85
CDY02548	Canola	cytosol	34.86	22.76
CDY70821	Canola	cytosol	35.56	22.54
CDX90860	Canola	cytosol	30.63	22.54
CDY28360	Canola	cytosol	13.03	21.76
CDY38589	Canola	cytosol	34.51	21.4
CDY28362	Canola	cytosol, nucleus, plastid	16.2	21.2
CDX82963	Canola	cytosol	30.99	21.0
CDX93274	Canola	cytosol	16.55	20.89
CDY70857	Canola	cytosol	30.63	20.76
CDY06998	Canola	cytosol	14.44	19.71
CDY48032	Canola	cytosol, extracellular, nucleus	15.85	19.57
CDX82115	Canola	extracellular	16.2	18.4
CDY44637	Canola	cytosol, mitochondrion, plastid	22.89	18.01
CDX87871	Canola	cytosol	58.1	17.95
CDY51196	Canola	cytosol	58.45	17.85
CDY02564	Canola	cytosol	58.45	17.73
CDY69096	Canola	cytosol	36.27	17.61
CDY60590	Canola	cytosol	36.27	17.61
CDY45301	Canola	cytosol	17.96	17.41
CDY53520	Canola	cytosol	17.96	17.41
CDY51197	Canola	cytosol	53.52	16.93
CDY13177	Canola	extracellular	18.66	16.77
CDY22878	Canola	cytosol	56.69	16.4
CDX82402	Canola	cytosol, plasma membrane	16.9	16.16
CDY68611	Canola	cytosol	14.44	15.47
CDY40959	Canola	cytosol	27.46	15.29
CDY02563	Canola	cytosol, extracellular	57.04	15.28
CDY63700	Canola	cytosol	31.34	15.21
CDY51195	Canola	cytosol, extracellular	56.69	15.13
CDX79175	Canola	cytosol	15.85	14.8
CDX92074	Canola	cytosol	33.45	14.62
CDY43099	Canola	cytosol	34.51	14.48
CDX96652	Canola	extracellular	31.34	14.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	7.39	14.09
CDY43910	Canola	cytosol	35.92	13.75
CDY47825	Canola	cytosol	38.03	13.62
CDY43090	Canola	cytosol	12.68	13.0
CDX75882	Canola	cytosol	13.03	12.94
CDY47824	Canola	cytosol	16.2	12.89
CDX82401	Canola	cytosol	11.27	12.03
CDY21999	Canola	extracellular	7.04	11.56
CDY59365	Canola	cytosol	30.28	10.78
CDX77840	Canola	cytosol	3.52	10.53
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	4.93	6.7
CDY34134	Canola	cytosol	2.82	3.85
CDY54394	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY65744	EnsemblPlantsGene:GSBRNA2T00048152001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419
PFscan:PS51752	ProteinID:CDY65744	ProteinID:CDY65744.1	SEG:seg	SMART:SM00915	SUPFAM:SSF51101
UniParc:UPI0004EDF580	UniProt:A0A078JGD6	MapMan:35.1	:	:	:

Description

BnaA06g37520DBnaA06g37520D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JGD6]

Coordinates

chrLK034931:+:20351..22848

Molecular Weight (calculated)

31250.8 Da

IEP (calculated)

5.452

GRAVY (calculated)

-0.420

Length

284 amino acids

Sequence
(BLAST)

001: MSKRVGPVGN YLGDAFDDGV FDGVKKIIVS VEGSPYNCIS MIKIEYEKDG KLESRQHGTV RGELKEFIVD HPNEYITSVG GSYDIVRTYY QSLLIKSLIF
101: KTNTGRASPG NKFDDGILDG VKKVTVAAGE YSVTYIKIEY ENNGKDEVRE HGTNRGELKE FSVNYPEDNI VSVGGTYNHI FNYDTTLITS LYFTTSKGFT
201: SPLFGVAKGK DFELQGESGE KLRGIYGRGG TAIDAIGAHF GPLGGNKGNT FDDGFFDGVK KLTIGADEYS IVYMKIEYQK DGKV

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.