CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytoskeleton 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, plasma membrane
Any Predictor:	cytoskeleton, cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32783	Canola	cytosol	54.0	58.13
CDY46535	Canola	cytosol	39.61	57.92
CDY47758	Canola	cytosol	54.0	57.25
CDY53442	Canola	cytosol	39.96	56.96
CDY51197	Canola	cytosol	88.45	55.46
CDY22879	Canola	cytosol	42.1	54.73
Bra014307.1-P	Field mustard	cytosol	84.19	54.17
AT1G52030.2	Thale cress	cytosol	55.24	48.44
CDY51196	Canola	cytosol	78.69	47.63
CDY02564	Canola	cytosol	78.51	47.22
CDY65744	Canola	peroxisome	22.91	45.42
CDY20195	Canola	cytosol	33.75	44.81
CDY51195	Canola	cytosol, extracellular	77.09	40.79
CDY02563	Canola	cytosol, extracellular	76.55	40.66
CDX93274	Canola	cytosol	15.81	39.56
CDX90860	Canola	cytosol	26.82	39.12
CDX74856	Canola	cytosol	30.91	37.83
CDY07657	Canola	cytosol	30.37	37.67
CDY06998	Canola	cytosol	13.85	37.5
CDY24969	Canola	cytosol	30.02	37.22
CDX93275	Canola	cytosol	28.77	36.16
CDY06997	Canola	cytosol	28.6	35.94
CDY06999	Canola	cytosol	19.89	35.22
CDY38589	Canola	cytosol	28.6	35.15
CDX93273	Canola	cytosol	28.42	35.09
CDY54394	Canola	cytosol	6.22	35.0
CDY07000	Canola	cytosol	26.82	34.16
CDY59556	Canola	cytosol	27.0	34.0
CDY45640	Canola	cytosol	18.47	33.88
CDY44637	Canola	cytosol, mitochondrion, plastid	21.67	33.8
CDY70821	Canola	cytosol	25.93	32.59
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	11.9	32.06
CDY02548	Canola	cytosol	24.51	31.72
CDX82402	Canola	cytosol, plasma membrane	16.34	30.98
CDY72239	Canola	cytosol	16.7	30.23
CDX82401	Canola	cytosol	14.21	30.08
CDY13177	Canola	extracellular	16.87	30.06
CDY45301	Canola	cytosol	15.63	30.03
CDY53520	Canola	cytosol	15.63	30.03
CDY47825	Canola	cytosol	42.1	29.89
CDY70857	Canola	cytosol	21.49	28.88
CDX82963	Canola	cytosol	21.49	28.88
CDX77840	Canola	cytosol	4.8	28.42
CDY20197	Canola	cytosol	10.3	28.16
CDY21999	Canola	extracellular	8.53	27.75
CDY68611	Canola	cytosol	12.97	27.55
CDX79175	Canola	cytosol	14.21	26.32
CDY28360	Canola	cytosol	7.64	25.29
CDY60590	Canola	cytosol	25.75	24.79
CDY69096	Canola	cytosol	25.58	24.62
CDY40959	Canola	cytosol	21.31	23.53
CDY28362	Canola	cytosol, nucleus, plastid	8.88	23.04
CDY22878	Canola	cytosol	38.72	22.2
CDX92074	Canola	cytosol	25.04	21.69
CDX75882	Canola	cytosol	11.01	21.68
CDY63700	Canola	cytosol	21.85	21.03
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.51	20.81
CDY43099	Canola	cytosol	24.51	20.38
CDX96652	Canola	extracellular	22.02	20.16
CDY43910	Canola	cytosol	25.75	19.54
CDX87871	Canola	cytosol	30.37	18.61
CDY59365	Canola	cytosol	23.98	16.92
CDY48032	Canola	cytosol, extracellular, nucleus	5.33	13.04
CDX82115	Canola	extracellular	4.97	11.2
CDY47824	Canola	cytosol	6.93	10.92
CDY43090	Canola	cytosol	4.8	9.75
CDY34134	Canola	cytosol	0.36	0.96

Protein Annotations

Gene3D:2.100.10.30	MapMan:35.1	GO:A0A078EKM3	EnsemblPlants:CDY02565	ProteinID:CDY02565	ProteinID:CDY02565.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00114250001	InterPro:IPR001229	InterPro:IPR036404
InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR23244
PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF51101	TMHMM:TMhelix	UniParc:UPI0004EDAEC8	SEG:seg

Description

BnaA08g01720D

Coordinates

chrLK031935:+:1140838..1143083

Molecular Weight (calculated)

62079.3 Da

IEP (calculated)

8.202

GRAVY (calculated)

-0.421

Length

563 amino acids

Sequence
(BLAST)

001: MKIEYENSDG NFETREHGTI RGGLQEVIDP CFVILQYVLI LSYLYCLVHL LFLTENEIQF TVDYPSEYIT SVGGRYEHVP RYGTVLIRSL IFKTSGGRTS
101: PILGYTTSFG HPAGREFMLE GKNGGRLLGF HGRSGQALDA IGPHFFAVNS PLKHFNRQGG NGGSAWDDGA FDGVRRILVG LGGRFISFLR FEYAKGQRMV
201: PHAHGKRQEV PQEFVVDYPN EHITVVEGTI DGYLTSLRFK TSKGRTSPAF GNVVGRKFVF EEKKFKLIGF SGRSGDVIDA LGANFGPYPA PTPAPTQASA
301: STKMGPLGGN KGNAFDDGIM DGVKKITVGA DEYSITYIKI EYEKEGKDEI RDHGTKRGEL KEFFVDYPNE YITAVGGSYK HIFNYDTTLV KSLYFTTSKG
401: FTSPLVGEMK GTEFEFKGEN GGKLVGFHGR GGYAIDAIGA HFSQAPISSP SSVIKVEAVG GKGEETFDDG SFHHVRKVSV GQGNSHISYI KFEYEKDGRR
501: ITQEHGQRTS RGTEVFEVGQ NDGITSVKAY YEKLDGWKTE TITHLAFKTL KGINSQTNRN GSP

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.