CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 16847873
cytosol: 19562800

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72239	Canola	cytosol	31.56	93.25
Bra030402.1-P	Field mustard	cytosol	95.87	82.26
CDY45640	Canola	cytosol	25.35	75.9
CDY22878	Canola	cytosol	68.44	64.05
CDY65744	Canola	peroxisome	17.95	58.1
CDY70821	Canola	cytosol	24.92	51.12
CDY22879	Canola	cytosol	23.18	49.19
CDY20195	Canola	cytosol	18.93	41.04
CDY24969	Canola	cytosol	19.91	40.31
CDY07657	Canola	cytosol	19.8	40.09
CDY43099	Canola	cytosol	29.05	39.44
CDX92074	Canola	cytosol	27.86	39.38
CDX77840	Canola	cytosol	4.03	38.95
CDX93274	Canola	cytosol	9.36	38.22
CDY46535	Canola	cytosol	16.0	38.18
CDY06997	Canola	cytosol	18.61	38.17
CDY53442	Canola	cytosol	16.32	37.97
CDX93275	Canola	cytosol	18.5	37.95
CDX90860	Canola	cytosol	15.89	37.82
CDY43090	Canola	cytosol	11.32	37.55
CDX93273	Canola	cytosol	18.61	37.5
CDX74856	Canola	cytosol	18.61	37.17
CDY06998	Canola	cytosol	8.27	36.54
CDY06999	Canola	cytosol	12.51	36.16
CDY07000	Canola	cytosol	17.3	35.97
CDY20197	Canola	cytosol	8.05	35.92
CDY32783	Canola	cytosol	19.8	34.8
CDY38589	Canola	cytosol	17.19	34.5
CDY47758	Canola	cytosol	19.7	34.09
CDX82402	Canola	cytosol, plasma membrane	10.88	33.67
CDY59556	Canola	cytosol	16.32	33.56
CDY21999	Canola	extracellular	6.09	32.37
CDY28362	Canola	cytosol, nucleus, plastid	7.62	32.26
CDX82401	Canola	cytosol	9.25	31.95
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	7.07	31.1
CDY44637	Canola	cytosol, mitochondrion, plastid	12.19	31.02
CDY13177	Canola	extracellular	10.66	31.01
CDY60590	Canola	cytosol	19.48	30.6
CDY28360	Canola	cytosol	5.66	30.59
CDY69096	Canola	cytosol	19.37	30.43
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	18.61	30.37
CDX82963	Canola	cytosol	13.71	30.07
CDY45301	Canola	cytosol	9.58	30.03
CDY70857	Canola	cytosol	13.6	29.83
CDY53520	Canola	cytosol	9.47	29.69
CDY02548	Canola	cytosol	14.04	29.66
CDY40959	Canola	cytosol	16.0	28.82
CDY54394	Canola	cytosol	3.05	28.0
CDY43910	Canola	cytosol	22.31	27.63
CDY59365	Canola	cytosol	23.94	27.57
CDX75882	Canola	cytosol	8.27	26.57
CDY68611	Canola	cytosol	7.4	25.66
CDX79175	Canola	cytosol	8.38	25.33
CDY63700	Canola	cytosol	14.58	22.91
CDX96652	Canola	extracellular	14.8	22.11
CDY02564	Canola	cytosol	22.2	21.79
CDY51196	Canola	cytosol	21.87	21.61
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	3.48	21.48
CDY47824	Canola	cytosol	8.27	21.29
CDY51197	Canola	cytosol	20.46	20.94
CDY34134	Canola	cytosol	4.35	19.23
CDY51195	Canola	cytosol, extracellular	21.76	18.8
CDY02563	Canola	cytosol, extracellular	21.65	18.77
CDY48032	Canola	cytosol, extracellular, nucleus	4.68	18.7
CDY47825	Canola	cytosol	15.45	17.91
CDX82115	Canola	extracellular	4.79	17.6

Protein Annotations

EnsemblPlants:CDX87871	EnsemblPlantsGene:GSBRNA2T00147077001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419
PFscan:PS51752	ProteinID:CDX87871	ProteinID:CDX87871.1	SEG:seg	SMART:SM00915	SUPFAM:SSF51101
UniParc:UPI0004EEE6C6	MapMan:35.1	:	:	:	:

Description

BnaC06g09330D

Coordinates

chrLK031852:-:1005002..1010530

Molecular Weight (calculated)

96221.9 Da

IEP (calculated)

5.565

GRAVY (calculated)

-0.592

Length

919 amino acids

Sequence
(BLAST)

001: MSWDDGTHAK VNRVQLTFDD VIRSIEVEYE GTNVQPQRRG TVGTNSDEFT LSSDEFITRV AGYYRTTFSG DVITALLFRT NKKTYGPYGN LTRNFFSADA
101: PRNNQIAGFL GNSGSALNSI NVHFAPIPPP GSIKPKPVGP GTGDAGSGQP ASPGTGDAGG GPKPGGPGTG ENGAGTKPSG PGTGENGAGT KPNDLGTGAD
201: GEGTKPGGSG TGEDGAGTKP GGLETGEDGA GTKPGGHGTG EDGAGTKPVG SGTGNDGGGP RPVIPGKMGP LGGDKGNEFD DVGFDGVKKI TVGADEFSVT
301: YIKIEYIKDG KVEIREHGTN RGQLKEFSVD YPNDNIVAVG GSYDHIFTYD TTLITSLYFT TSRGFTSPLF GEKTGTDFEF QGENKGKLLG FHGRAGHAID
401: AIGAYFHTGS QGGQGAGGPR PVVPGKMGPL GGAKGNEFDD VGFDGVKKVT VGADEFSVTY IKIEYIKDGK VEIREHGTNR GQLKEFSVDY PNDNIVAVGG
501: SYDHIFTYDT TLIKSLYFTT SRGFTSPLFG EKTGTDFEFQ GENRGKLLGF HGRAGYAIDA IGAYFHTGSQ GGEGGGPKPV VPVKMGPLGG DRGNEFNDVG
601: FDGVKRVAVA ADEFSVTYIK IEYVKDGKVE IREHGTSRGQ VKEFSVDYPN DNFTAVGGSY DHIFTYDTTL ITSLYLTTSR GFTSPLFGEM KGTEFEFKGE
701: NGEKLIGFHG RAGHAIDAIG AYFDTGSKPG GDSNSGKGTD SGSSTKDSGK GTDSGSSTKD NSGKGSDSGS STQRLEAQGG KGGNQWDDGG DYDGVTKIHV
801: AVGRGIEQIS FEYVKNGQTK EGPARGVRGR RSTIGTFEIS HPNEYLISVK GWSDSSNKIA GIQFKTNTKT SKYYGFEKLP GEESTDILLE VKDKKIVGFH
901: GFADSHVNAL GAYIAPAAN

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.