CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

cytosol: 19562800

msms PMID: 19562800 doi

P Jolivet, C Boulard, A Bellamy, C Larré, M Barre, H Rogniaux, S d'Andréa, T Chardot, N Nesi

NRA, UMR 206, Chimie Biologique, Thiverval-Grignon, France. jolivet@grignon.inra.fr

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014308.1-P	Field mustard	cytosol	77.14	98.5
CDY51196	Canola	cytosol	96.69	97.31
CDY51197	Canola	cytosol	81.94	85.41
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	47.22	78.51
CDY02563	Canola	cytosol, extracellular	87.07	76.89
CDY51195	Canola	cytosol, extracellular	87.18	76.69
CDY47825	Canola	cytosol	60.26	71.12
CDY46535	Canola	cytosol	27.88	67.79
CDY53442	Canola	cytosol	28.53	67.59
CDY32783	Canola	cytosol	37.61	67.3
CDY47758	Canola	cytosol	37.61	66.29
CDY22879	Canola	cytosol	29.7	64.2
AT1G52030.2	Thale cress	cytosol	43.27	63.08
CDY65744	Canola	peroxisome	17.73	58.45
CDY20195	Canola	cytosol	23.08	50.94
CDX74856	Canola	cytosol	20.73	42.17
CDY07657	Canola	cytosol	20.3	41.85
CDY24969	Canola	cytosol	20.09	41.41
CDX93274	Canola	cytosol	9.94	41.33
CDX90860	Canola	cytosol	16.88	40.93
CDY06997	Canola	cytosol	19.23	40.18
CDX93273	Canola	cytosol	19.55	40.13
CDY70821	Canola	cytosol	19.12	39.96
CDX93275	Canola	cytosol	19.02	39.73
CDY06999	Canola	cytosol	13.46	39.62
CDY06998	Canola	cytosol	8.76	39.42
CDY07000	Canola	cytosol	18.59	39.37
CDY38589	Canola	cytosol	18.7	38.21
CDY54394	Canola	cytosol	3.95	37.0
CDX82401	Canola	cytosol	10.36	36.47
CDY59556	Canola	cytosol	17.41	36.47
CDY20197	Canola	cytosol	8.01	36.41
CDX82402	Canola	cytosol, plasma membrane	11.54	36.36
CDY02548	Canola	cytosol	16.56	35.63
CDY45640	Canola	cytosol	11.65	35.5
CDY44637	Canola	cytosol, mitochondrion, plastid	13.35	34.63
CDY70857	Canola	cytosol	15.06	33.65
CDY13177	Canola	extracellular	11.32	33.54
CDX82963	Canola	cytosol	14.85	33.17
CDY28360	Canola	cytosol	5.98	32.94
CDY45301	Canola	cytosol	10.04	32.08
CDY53520	Canola	cytosol	10.04	32.08
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	7.05	31.58
CDY28362	Canola	cytosol, nucleus, plastid	7.26	31.34
CDY72239	Canola	cytosol	10.36	31.19
CDY68611	Canola	cytosol	8.55	30.19
CDY21999	Canola	extracellular	5.56	30.06
CDX75882	Canola	cytosol	8.87	29.02
CDX77840	Canola	cytosol	2.88	28.42
CDY22878	Canola	cytosol	29.59	28.21
CDX79175	Canola	cytosol	8.97	27.63
CDY40959	Canola	cytosol	14.96	27.45
CDY60590	Canola	cytosol	17.09	27.35
CDY69096	Canola	cytosol	16.99	27.18
CDX92074	Canola	cytosol	17.52	25.23
CDY63700	Canola	cytosol	15.17	24.27
CDY43099	Canola	cytosol	17.41	24.08
CDX96652	Canola	extracellular	15.28	23.25
CDY43910	Canola	cytosol	17.95	22.64
CDX87871	Canola	cytosol	21.79	22.2
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	3.42	21.48
CDY48032	Canola	cytosol, extracellular, nucleus	5.13	20.87
CDY59365	Canola	cytosol	16.88	19.8
CDX82115	Canola	extracellular	4.91	18.4
CDY47824	Canola	cytosol	5.66	14.85
CDY43090	Canola	cytosol	4.38	14.8
CDY34134	Canola	cytosol	1.28	5.77

Protein Annotations

Gene3D:2.100.10.30	Gene3D:2.120.10.80	MapMan:9.5.2.2	EnsemblPlants:CDY02564	ProteinID:CDY02564	ProteinID:CDY02564.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00114249001	InterPro:IPR001229
InterPro:IPR015915	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	InterPro:Kelch-typ_b-propeller
InterPro:Kelch_1	PFAM:PF01344	PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR23244	PANTHER:PTHR23244:SF208
SMART:SM00612	SMART:SM00915	SUPFAM:SSF117281	SUPFAM:SSF51101	UniParc:UPI0004EF016F	SEG:seg

Description

BnaA08g01710D

Coordinates

chrLK031935:+:1132003..1135791

Molecular Weight (calculated)

101820.0 Da

IEP (calculated)

7.414

GRAVY (calculated)

-0.354

Length

936 amino acids

Sequence
(BLAST)

001: METMSEKVGA VGGNKGGPFD DGVFDGVKKI TVGKDFHSVS YIKIEYEKDG KFETREHGTI RGELQEFTVD YPNEYITSVG GSYEHVLSYG TVLIKSLRFK
101: TSYGRTSPIL GHTTLFGNPD GREFLLEGKD GGKLLGFHGR SGQALDAIGP HFFAVKSPLK HYNRQGGNGG SAWDDGAFDG VRKILVGRGG KFVSYVRFEY
201: AKGQGMVPHA HGKRQEVPQE FVVDYPNEHI TSVEGTIDGY LTSLKFKTSK GRTSPAFGNV AGRKFVFEEK DFKLVGFCGR SGDAIDAIGA HFAPLPPPPP
301: PPAPTPAPTP TPAPAPTPAP TTTTKMGPLG GNKGNTFDDG ILDGVKKIII AADEYSITYI KIEYEKDGKV EIREHGTNRG ELKEFSVAYP NEYITAVGGS
401: YKHIFNYDTT LIKSLYFTTS KGFTSPLFGE MKGTEFEFKG ENGGKLVGFH GRGGYAIDAI GAHFAQATTS SSSSLIKVEA VGGKGEVTFD DGSFDHVRKV
501: FVGQGNSGVS YIKFEYEKDG RIVTHEHGQK TSLGTEEFEV GQGDDITSVK VYYDKLYGSK AEIITSLTFK TLKGITSQPF GMTSANLSLL EGGKITGFHG
601: SSTDVLHSIG AYISASPRTM LHGKWIQVEQ KGKTPGPRCS HAIAMVGNKM YAFGGELTPN FHIDRHLYFF DFKTHRWSVA DPDGDVPELP CLGVCMVAIG
701: TTLYVFGGRD GHRNYNGFYS YDTVKSEWKL ITHVNKGPAP RSFHSMAADN KNIYVFGGVS TTVRVNTLHA YNIIDQKWTE LPNPGESCKG RGGAGLAVVQ
801: GKIWVVYGFI GDEVDDVHCF DLVERKWTKV ETRGEKPWAR SVFALAVVGK YIIISGGEIE MDPKAHLGPG KLAGGTFVLD TESLLWEKLE EGHSPRGWIA
901: STTASIDGKR GLLMHGGKAP TNGRYEDIFF YGVDSA

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.