CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46535	Canola	cytosol	93.42	95.84
CDY32783	Canola	cytosol	55.7	42.06
CDY47758	Canola	cytosol	55.95	41.62
CDY65744	Canola	peroxisome	29.62	41.2
CDY02565	Canola	cytoskeleton, cytosol, plasma membrane	56.96	39.96
CDY06999	Canola	cytosol	30.13	37.42
AT1G52030.2	Thale cress	cytosol	57.97	35.67
CDY22879	Canola	cytosol	38.48	35.1
CDY20195	Canola	cytosol	37.22	34.67
CDY51197	Canola	cytosol	70.38	30.96
CDY06997	Canola	cytosol	33.92	29.91
CDX93275	Canola	cytosol	33.67	29.69
CDX93273	Canola	cytosol	33.92	29.39
CDX74856	Canola	cytosol	33.92	29.13
CDY51196	Canola	cytosol	68.35	29.03
CDY07657	Canola	cytosol	33.16	28.85
CDY47825	Canola	cytosol	57.72	28.75
CDY02564	Canola	cytosol	67.59	28.53
CDY24969	Canola	cytosol	32.41	28.19
CDY07000	Canola	cytosol	30.38	27.15
CDY20197	Canola	cytosol	13.67	26.21
CDY44637	Canola	cytosol, mitochondrion, plastid	23.8	26.04
CDY38589	Canola	cytosol	30.13	25.98
CDX90860	Canola	cytosol	25.06	25.65
CDY51195	Canola	cytosol, extracellular	68.86	25.56
CDY02563	Canola	cytosol, extracellular	67.09	25.0
CDX82963	Canola	cytosol	26.33	24.82
CDY70857	Canola	cytosol	26.33	24.82
CDY02548	Canola	cytosol	27.09	24.6
CDY28362	Canola	cytosol, nucleus, plastid	12.15	22.12
CDY59556	Canola	cytosol	24.3	21.48
CDY28360	Canola	cytosol	8.86	20.59
CDY40959	Canola	cytosol	25.32	19.61
CDY48032	Canola	cytosol, extracellular, nucleus	11.14	19.13
CDX93274	Canola	cytosol	10.63	18.67
CDY69096	Canola	cytosol	27.09	18.29
CDY60590	Canola	cytosol	27.09	18.29
CDY45640	Canola	cytosol	14.18	18.24
CDX82402	Canola	cytosol, plasma membrane	13.16	17.51
CDY68611	Canola	cytosol	11.65	17.36
CDX82115	Canola	extracellular	10.63	16.8
CDX75882	Canola	cytosol	12.15	16.78
CDX82401	Canola	cytosol	11.14	16.54
CDX87871	Canola	cytosol	37.97	16.32
CDY72239	Canola	cytosol	12.66	16.08
CDY06998	Canola	cytosol	8.35	15.87
CDX77840	Canola	cytosol	3.8	15.79
CDY63700	Canola	cytosol	22.78	15.38
CDX92074	Canola	cytosol	25.32	15.38
CDY13177	Canola	extracellular	12.15	15.19
CDX79175	Canola	cytosol	11.65	15.13
CDY22878	Canola	cytosol	37.47	15.07
CDY43910	Canola	cytosol	27.85	14.82
CDY43090	Canola	cytosol	10.38	14.8
CDY43099	Canola	cytosol	25.32	14.77
CDX96652	Canola	extracellular	22.78	14.63
CDY47824	Canola	cytosol	12.15	13.45
CDY45301	Canola	cytosol	9.87	13.31
CDY70821	Canola	cytosol	14.94	13.17
CDY53520	Canola	cytosol	9.62	12.97
CDY59365	Canola	cytosol	22.78	11.28
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	2.28	6.04
CDX75881	Canola	cytosol, extracellular, mitochondrion, plastid	3.04	5.74
CDY34134	Canola	cytosol	2.78	5.29
CDY21999	Canola	extracellular	2.03	4.62
CDY54394	Canola	cytosol	0.51	2.0

Protein Annotations

Gene3D:2.100.10.30	MapMan:35.1	UniProt:A0A078ITW1	EnsemblPlants:CDY53442	ProteinID:CDY53442	ProteinID:CDY53442.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	EnsemblPlantsGene:GSBRNA2T00010700001	InterPro:IPR001229	InterPro:IPR036404
InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR23244
PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0004EE4D39	SEG:seg	:

Description

BnaC03g78030DBnaC03g78030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITW1]

Coordinates

chrLK033203:-:59329..61262

Molecular Weight (calculated)

41606.9 Da

IEP (calculated)

9.652

GRAVY (calculated)

-0.405

Length

395 amino acids

Sequence
(BLAST)

001: MGTMSERVGA MGGNMGSPFD DGVFDGVRRI IVGRDWDCVS YIKIEYENND GNFETREHGT NRGGLQEFTV DYPTEYITSV GGSFSHVFRY GTALIQSLIF
101: RTSRGRTSPI LGHSFLGFQL GTRFTLEGKN GGKLLGFHGR SGQALDAIGP YFFAANPPLR HFNPQGGNGG SAWDDGAFDG VRRILVGRGG RFVSFLRFEY
201: ARDQRTVPHD HGRRQEVPQE FVVDHPNEHI TVVEGTIDGF LTSLRFQTSI GRTSPAFGNV VGRRFVFEEN NFKLVGFSGR SGDVIDALGA NFGPLPAPTP
301: VPAPVPAPAP RPSPAPAPAP RPSPAPGSAG RWPPAPAPAP APGPAPAPAP VPAPAPAHAP GPAPGQGPAP GRAPDRAPDR APGPAPGPAP GPAGR

Best Arabidopsis Sequence Match ( AT1G52030.1 )
(BLAST)

001: MSEKVGAMGG NKGGAFDDGV FDGVKKVIVG KDFNNVTYIK VEYEKDGKFE IREHGTNRGQ LKEFSVDYPN EYITAVGGSY DTVFGYGSAL IKSLLFKTSY
101: GRTSPILGHT TLLGNPAGKE FMLESKYGGK LLGFHGRSGE ALDAIGPHFF AVNSSLKHFK PQGGNGGSAW DDGAFDGVRK VLVGRNGKFV SYVRFEYAKG
201: ERMVPHAHGK RQEAPQEFVV DYPNEHITSV EGTIDGYLSS LKFTTSKGRT SPVFGNVVGS KFVFEETSFK LVGFCGRSGE AIDALGAHFA PLPAPTPAPA
301: PAPAPAPAPA PSPAPASAPV PAPAPTPAPA PAPPNKVEAL GGNGGTIFDD GAFDHVRKVY IGQGDSGVAY VKFEYRKDGK RETREHGKMT VLGTEEFEVE
401: SDDYITSIEV SVDNVFGFKS EIVTSLVFKT FKGITSQPFG METEKKLELK DGKGGKLVGF HGKASDVLYA LGAYFAPTTN STTPSTPSTS KKLQARGGNG
501: GASWDDGVFD GVRKILVGQG NDGVAFVTFE YNKGSQAILG DRHGKQTLLG TETFELDYPS EYITSVEGYY DKIFGVEAEV VTSLTFKTNK RTSQPFGMTA
601: GEHFELNEDG YKIVGFHGKA GDLVHQIGVH AVPIFTNYRC VF

Arabidopsis Description

F-ATMBPMyrosinase-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.