Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G16430.2 | Thale cress | cytosol | 84.9 | 85.47 |
| CDX82402 | Canola | cytosol, plasma membrane | 78.86 | 79.12 |
| Bra001631.1-P | Field mustard | cytosol | 78.86 | 79.12 |
| AT3G16450.2 | Thale cress | cytosol | 50.67 | 50.33 |
| AT3G16440.2 | Thale cress | cytosol | 48.99 | 45.2 |
| AT1G52060.1 | Thale cress | extracellular | 43.29 | 41.08 |
| AT1G52050.1 | Thale cress | extracellular | 41.95 | 39.94 |
| AT1G52070.1 | Thale cress | extracellular | 41.61 | 39.37 |
| AT2G25980.1 | Thale cress | cytosol | 56.38 | 37.42 |
| AT1G52100.1 | Thale cress | cytosol | 52.35 | 35.7 |
| AT5G35940.1 | Thale cress | cytosol | 53.02 | 35.59 |
| AT5G35950.1 | Thale cress | cytosol | 51.34 | 34.46 |
| AT5G28520.1 | Thale cress | cytosol | 51.34 | 33.77 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 24.83 | 33.48 |
| AT3G16470.1 | Thale cress | cytosol | 44.63 | 29.49 |
| AT2G39310.4 | Thale cress | cytosol | 44.63 | 29.04 |
| AT3G21380.1 | Thale cress | cytosol | 43.29 | 28.04 |
| AT1G61230.1 | Thale cress | cytosol | 46.31 | 27.33 |
| AT2G39330.2 | Thale cress | cytosol | 45.3 | 26.63 |
| AT3G16460.1 | Thale cress | cytosol | 61.74 | 26.1 |
| AT1G60095.1 | Thale cress | cytosol | 49.66 | 24.63 |
| AT1G57570.1 | Thale cress | mitochondrion | 50.0 | 24.27 |
| AT1G60130.1 | Thale cress | cytosol | 48.66 | 24.17 |
| AT1G52120.2 | Thale cress | cytosol | 36.58 | 23.75 |
| AT5G49870.1 | Thale cress | cytosol | 47.65 | 23.63 |
| AT1G60110.2 | Thale cress | cytosol | 48.66 | 23.31 |
| AT1G33790.2 | Thale cress | cytosol | 57.05 | 22.82 |
| AT5G49850.1 | Thale cress | cytosol | 45.3 | 22.65 |
| AT1G52110.1 | Thale cress | mitochondrion | 45.3 | 21.95 |
| AT5G38550.1 | Thale cress | cytosol | 42.62 | 21.38 |
| AT5G46000.1 | Thale cress | cytosol | 27.52 | 20.71 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 9.4 | 18.79 |
| AT1G52030.2 | Thale cress | cytosol | 35.57 | 16.51 |
| AT1G73040.1 | Thale cress | cytosol | 9.73 | 16.48 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 31.54 | 15.64 |
| AT1G52130.1 | Thale cress | cytosol | 24.83 | 15.32 |
| AT5G38540.1 | Thale cress | cytosol | 23.15 | 14.74 |
| AT1G52040.1 | Thale cress | cytosol | 21.14 | 13.64 |
| AT1G52000.2 | Thale cress | cytosol | 32.89 | 13.42 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:820890 | ProteinID:AAB63635.1 | ProteinID:AEE75810.1 | ProteinID:AEE75811.1 |
| ProteinID:AEE75812.1 | EMBL:AF370488 | EMBL:AK319056 | ArrayExpress:AT3G16420 | EnsemblPlantsGene:AT3G16420 | RefSeq:AT3G16420 |
| TAIR:AT3G16420 | RefSeq:AT3G16420-TAIR-G | EnsemblPlants:AT3G16420.1 | TAIR:AT3G16420.1 | EMBL:AY064653 | EMBL:AY065189 |
| EMBL:AY088397 | EMBL:AY128360 | ProteinID:BAB01141.1 | EMBL:BT000021 | EMBL:BT002196 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005507 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006457 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0030234 | GO:GO:0030246 | GO:GO:0051336 | InterPro:IPR001229 | InterPro:IPR036404 |
| InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_001030710.1 | RefSeq:NP_188263.1 | RefSeq:NP_850594.1 |
| UniProt:O04314 | Symbol:PBP1 | PFAM:PF01419 | PO:PO:0000293 | PO:PO:0007131 | PO:PO:0009005 |
| PO:PO:0009010 | PO:PO:0009025 | PFscan:PS51752 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF208 | SMART:SM00915 |
| SUPFAM:SSF51101 | UniParc:UPI00000AC090 | SEG:seg | : | : | : |
Description
PBP1PYK10-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04314]
Coordinates
chr3:+:5579290..5581032
Molecular Weight (calculated)
32159.9 Da
IEP (calculated)
5.560
GRAVY (calculated)
-0.303
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQKVEAQGG KGANLWDDGS THDAVTKIQL AAGIDGIQYV QFDYVKNGQP EQAPLRGTKG RVLPADPFVI NHPDEHLVSV EGWYSPEGII QGIKFISNKK
101: TSDVIGSDEG THFTLQVKDK KIIGFHGSAG GNLNSLGAYF APLTTTTPLT PAKQLTAFGS DDGTVWDDGA YVGVKKVYVG QAQDGISAVK FVYDKSPEEV
201: TGEEHGKSTL LGFEEFVLDY PSEYITAVDG TYDKIFGSDG SVITMLRFKT NKQTSPPFGL EAGTVFELKE EGHKIVGFHG RADVLLHKIG VHVRPLSN
101: TSDVIGSDEG THFTLQVKDK KIIGFHGSAG GNLNSLGAYF APLTTTTPLT PAKQLTAFGS DDGTVWDDGA YVGVKKVYVG QAQDGISAVK FVYDKSPEEV
201: TGEEHGKSTL LGFEEFVLDY PSEYITAVDG TYDKIFGSDG SVITMLRFKT NKQTSPPFGL EAGTVFELKE EGHKIVGFHG RADVLLHKIG VHVRPLSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.