Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60095.1 | Thale cress | cytosol | 70.33 | 70.22 |
| AT1G60110.2 | Thale cress | cytosol | 72.33 | 69.77 |
| CDY60590 | Canola | cytosol | 57.67 | 59.15 |
| CDY69096 | Canola | cytosol | 57.5 | 58.97 |
| Bra018945.1-P | Field mustard | cytosol | 50.0 | 56.93 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 20.67 | 56.11 |
| CDY34134 | Canola | cytosol | 18.83 | 54.33 |
| AT1G61230.1 | Thale cress | cytosol | 45.5 | 54.06 |
| AT5G49870.1 | Thale cress | cytosol | 53.83 | 53.74 |
| AT2G25980.1 | Thale cress | cytosol | 39.83 | 53.23 |
| AT5G49850.1 | Thale cress | cytosol | 52.67 | 53.02 |
| AT5G38550.1 | Thale cress | cytosol | 51.67 | 52.19 |
| AT1G57570.1 | Thale cress | mitochondrion | 51.83 | 50.65 |
| AT1G52110.1 | Thale cress | mitochondrion | 51.83 | 50.57 |
| AT1G52100.1 | Thale cress | cytosol | 36.5 | 50.11 |
| AT5G35940.1 | Thale cress | cytosol | 37.0 | 50.0 |
| AT5G35950.1 | Thale cress | cytosol | 36.83 | 49.77 |
| AT3G16430.2 | Thale cress | cytosol | 24.5 | 49.66 |
| AT5G38540.1 | Thale cress | cytosol | 38.5 | 49.36 |
| AT1G52130.1 | Thale cress | cytosol | 39.5 | 49.07 |
| AT3G16420.1 | Thale cress | cytosol | 24.17 | 48.66 |
| CDY47824 | Canola | cytosol | 27.83 | 46.78 |
| AT1G52070.1 | Thale cress | extracellular | 24.17 | 46.03 |
| AT1G52060.1 | Thale cress | extracellular | 24.0 | 45.86 |
| AT1G52050.1 | Thale cress | extracellular | 23.67 | 45.37 |
| AT5G28520.1 | Thale cress | cytosol | 33.83 | 44.81 |
| AT3G16450.2 | Thale cress | cytosol | 22.17 | 44.33 |
| AT3G16440.2 | Thale cress | cytosol | 23.67 | 43.96 |
| AT1G33790.2 | Thale cress | cytosol | 49.67 | 40.0 |
| AT2G39310.4 | Thale cress | cytosol | 29.83 | 39.08 |
| AT3G16470.1 | Thale cress | cytosol | 27.33 | 36.36 |
| AT3G21380.1 | Thale cress | cytosol | 27.5 | 35.87 |
| AT1G52120.2 | Thale cress | cytosol | 26.5 | 34.64 |
| AT2G39330.2 | Thale cress | cytosol | 29.17 | 34.52 |
| AT5G46000.1 | Thale cress | cytosol | 20.67 | 31.31 |
| AT3G16460.1 | Thale cress | cytosol | 35.5 | 30.21 |
| AT1G52030.2 | Thale cress | cytosol | 28.5 | 26.64 |
| AT1G73040.1 | Thale cress | cytosol | 7.0 | 23.86 |
| AT1G52040.1 | Thale cress | cytosol | 17.67 | 22.94 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 20.33 | 20.3 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 4.83 | 19.46 |
| AT1G52000.2 | Thale cress | cytosol | 22.0 | 18.08 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:842308 | ProteinID:AAC24047.1 | ProteinID:AEE33661.1 | ProteinID:ANM58283.1 |
| ArrayExpress:AT1G60130 | EnsemblPlantsGene:AT1G60130 | RefSeq:AT1G60130 | TAIR:AT1G60130 | RefSeq:AT1G60130-TAIR-G | EnsemblPlants:AT1G60130.1 |
| TAIR:AT1G60130.1 | Unigene:At.52281 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 | InterPro:IPR001229 |
| InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_001320730.1 | RefSeq:NP_176220.1 |
| UniProt:O80737 | PFAM:PF01419 | PFscan:PS51752 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF208 | SMART:SM00915 |
| SUPFAM:SSF51101 | UniParc:UPI00000AA494 | SEG:seg | : | : | : |
Description
JAL18Jacalin-related lectin 18 [Source:UniProtKB/Swiss-Prot;Acc:O80737]
Coordinates
chr1:+:22174179..22176343
Molecular Weight (calculated)
67010.1 Da
IEP (calculated)
6.212
GRAVY (calculated)
-0.385
Length
600 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQVFSNLFQ MTQRLEAQGQ KTLDSPFVWD DGSDHDDVTK IHVRGDSRGI NCIRFDYIKS GQRKYKSFYG PSWAGFTQTF KINHKEDEQL ESVEGFYKPD
101: SRTIVGLQFK TNLRISELIG HGKKDDTKFS LAVDGKKIIG FHGCSGSYLE SLGAYFTCIA PTRMEAKGAK GGTDWNDGAD HEGVAKIYVR GGRDCIQYIK
201: FDYVKDRKYI YGPAHGVRGR GFTESFEINH LDNEYMVSVE GYYDEGDSGI IQGIQFRTNI KTSELIGYNN GKKFSLAANG KKIIGFHGYA DQNLNSLGAY
301: FTTSPFIKLE SRESTGDLWD DGTFEGVRKV CIHKQPVLYS VIQFEYVNRG EVENRDLGLR VFIAEEGEFV VNYPYEFIIS VEGTFTNEKD PHVASLTFKT
401: SKGRTSSTFG TPGTKKFVLQ SKGCGVVGFH GVLSNDYISG LGAYFRLLPP LPDGEKVEAK GGDGGASWDD GGFDCIRKIY IGHGEMGIAF VKFLYDKDNK
501: FVVGDDHGSK TLLGVDEFEL EHPDEYLISV EGSYDVVDGS ESEVILMLRF KTNMRTSQVF GLDTTSSFIL EKECHKIVGF HGKIGKMLHQ IGVHVLPIID
101: SRTIVGLQFK TNLRISELIG HGKKDDTKFS LAVDGKKIIG FHGCSGSYLE SLGAYFTCIA PTRMEAKGAK GGTDWNDGAD HEGVAKIYVR GGRDCIQYIK
201: FDYVKDRKYI YGPAHGVRGR GFTESFEINH LDNEYMVSVE GYYDEGDSGI IQGIQFRTNI KTSELIGYNN GKKFSLAANG KKIIGFHGYA DQNLNSLGAY
301: FTTSPFIKLE SRESTGDLWD DGTFEGVRKV CIHKQPVLYS VIQFEYVNRG EVENRDLGLR VFIAEEGEFV VNYPYEFIIS VEGTFTNEKD PHVASLTFKT
401: SKGRTSSTFG TPGTKKFVLQ SKGCGVVGFH GVLSNDYISG LGAYFRLLPP LPDGEKVEAK GGDGGASWDD GGFDCIRKIY IGHGEMGIAF VKFLYDKDNK
501: FVVGDDHGSK TLLGVDEFEL EHPDEYLISV EGSYDVVDGS ESEVILMLRF KTNMRTSQVF GLDTTSSFIL EKECHKIVGF HGKIGKMLHQ IGVHVLPIID
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.