Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G52070.1 | Thale cress | extracellular | 28.76 | 41.9 |
| AT1G52060.1 | Thale cress | extracellular | 28.54 | 41.72 |
| CDX77840 | Canola | cytosol | 8.5 | 41.05 |
| AT1G52050.1 | Thale cress | extracellular | 27.45 | 40.26 |
| AT2G25980.1 | Thale cress | cytosol | 37.91 | 38.75 |
| AT5G35950.1 | Thale cress | cytosol | 36.82 | 38.06 |
| AT5G28520.1 | Thale cress | cytosol | 36.82 | 37.31 |
| AT5G35940.1 | Thale cress | cytosol | 35.95 | 37.16 |
| AT1G52100.1 | Thale cress | cytosol | 34.86 | 36.61 |
| AT3G16420.1 | Thale cress | cytosol | 23.75 | 36.58 |
| AT3G16430.2 | Thale cress | cytosol | 23.09 | 35.81 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 17.21 | 35.75 |
| AT3G16450.2 | Thale cress | cytosol | 23.09 | 35.33 |
| AT3G16440.2 | Thale cress | cytosol | 23.31 | 33.13 |
| AT3G21380.1 | Thale cress | cytosol | 32.68 | 32.61 |
| AT3G16470.1 | Thale cress | cytosol | 31.59 | 32.15 |
| AT1G61230.1 | Thale cress | cytosol | 34.86 | 31.68 |
| AT2G39310.4 | Thale cress | cytosol | 29.85 | 29.91 |
| AT5G38550.1 | Thale cress | cytosol | 37.47 | 28.96 |
| AT2G39330.2 | Thale cress | cytosol | 30.72 | 27.81 |
| AT1G57570.1 | Thale cress | mitochondrion | 37.04 | 27.69 |
| AT5G38540.1 | Thale cress | cytosol | 27.89 | 27.35 |
| AT5G49850.1 | Thale cress | cytosol | 35.29 | 27.18 |
| AT1G52110.1 | Thale cress | mitochondrion | 36.17 | 26.99 |
| AT5G49870.1 | Thale cress | cytosol | 35.29 | 26.96 |
| AT1G60095.1 | Thale cress | cytosol | 35.29 | 26.96 |
| AT1G52040.1 | Thale cress | cytosol | 27.02 | 26.84 |
| AT5G46000.1 | Thale cress | cytosol | 23.09 | 26.77 |
| AT1G60130.1 | Thale cress | cytosol | 34.64 | 26.5 |
| AT1G73040.1 | Thale cress | cytosol | 9.8 | 25.57 |
| AT1G60110.2 | Thale cress | cytosol | 33.99 | 25.08 |
| AT1G52030.2 | Thale cress | cytosol | 33.12 | 23.68 |
| AT1G33790.2 | Thale cress | cytosol | 38.34 | 23.62 |
| AT3G16460.1 | Thale cress | cytosol | 36.17 | 23.55 |
| AT1G52130.1 | Thale cress | cytosol | 23.31 | 22.15 |
| AT1G52000.2 | Thale cress | cytosol | 34.2 | 21.51 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 26.14 | 19.97 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 5.45 | 16.78 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:841642 | ProteinID:AAD12686.1 | ProteinID:AEE32757.1 | EMBL:AK229754 |
| ProteinID:ANM61114.1 | ArrayExpress:AT1G52120 | EnsemblPlantsGene:AT1G52120 | RefSeq:AT1G52120 | TAIR:AT1G52120 | RefSeq:AT1G52120-TAIR-G |
| EnsemblPlants:AT1G52120.2 | Unigene:At.37664 | EMBL:BT010452 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 |
| InterPro:IPR001229 | InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_001323351.1 |
| RefSeq:NP_175624.2 | PFAM:PF01419 | PFscan:PS51752 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF208 | UniProt:Q0WMR0 |
| SMART:SM00915 | SUPFAM:SSF51101 | UniParc:UPI00005DC1CD | SEG:seg | : | : |
Description
JAL12Jacalin-related lectin 12 [Source:UniProtKB/Swiss-Prot;Acc:Q0WMR0]
Coordinates
chr1:-:19396081..19397975
Molecular Weight (calculated)
50911.4 Da
IEP (calculated)
4.921
GRAVY (calculated)
-0.540
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQDSNALEM IQNEGPKWDD GFDHDDVTKI YLVGGKTGID FIKIDYVKSG KPKNGPFHGY SGGGFLQMFE IDNLKNEYLE SVEGYYTNRS GEFIGAIQFK
101: TNLRVSEIIG YSYWGLKKFK LAKHGNKIIG FQGSAEYRLK DLDAYFTPIT PTRMEAQGGN GGTKWDDGGD HDSVTKIQVR INKEGIQYIK FNYVDKDGDP
201: EKEQLHGSET GRGYTLEPFE INHSDKEYLL SIDGCYDEDS GVIQSLQLKT NIKTSEVMGD DEKGTKFTLG CNGHEIIGFH GSAQDNLNAL GAYITTLTLT
301: KLEYIGEGSD IWDDGTFEGV KKVSFYHNDG IVRCIEFDYV KDGKIETRVQ GGKRGTGDFT KEEFTVDYPN EFLTSVEGTY RDNPGGTLIT SLTFKTSNNR
401: TSPILGKASN KTFLLESKGC ALVGFHGASS DFFLYALGAY SFPMTSLAEA GRGAIHTSW
101: TNLRVSEIIG YSYWGLKKFK LAKHGNKIIG FQGSAEYRLK DLDAYFTPIT PTRMEAQGGN GGTKWDDGGD HDSVTKIQVR INKEGIQYIK FNYVDKDGDP
201: EKEQLHGSET GRGYTLEPFE INHSDKEYLL SIDGCYDEDS GVIQSLQLKT NIKTSEVMGD DEKGTKFTLG CNGHEIIGFH GSAQDNLNAL GAYITTLTLT
301: KLEYIGEGSD IWDDGTFEGV KKVSFYHNDG IVRCIEFDYV KDGKIETRVQ GGKRGTGDFT KEEFTVDYPN EFLTSVEGTY RDNPGGTLIT SLTFKTSNNR
401: TSPILGKASN KTFLLESKGC ALVGFHGASS DFFLYALGAY SFPMTSLAEA GRGAIHTSW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.