Factsheet for AT5G38540.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G38550.1	Thale cress	cytosol	83.12	65.49
AT1G52130.1	Thale cress	cytosol	47.22	45.76
AT1G60095.1	Thale cress	cytosol	50.43	39.27
AT1G57570.1	Thale cress	mitochondrion	50.64	38.6
AT5G49850.1	Thale cress	cytosol	49.15	38.59
AT1G60130.1	Thale cress	cytosol	49.36	38.5
AT5G49870.1	Thale cress	cytosol	48.5	37.77
AT1G60110.2	Thale cress	cytosol	49.79	37.46
AT1G61230.1	Thale cress	cytosol	40.38	37.43
AT1G52110.1	Thale cress	mitochondrion	48.5	36.91
AT2G25980.1	Thale cress	cytosol	32.05	33.41
AT5G28520.1	Thale cress	cytosol	32.05	33.11
AT1G52100.1	Thale cress	cytosol	30.56	32.72
AT5G35940.1	Thale cress	cytosol	30.13	31.76
AT5G35950.1	Thale cress	cytosol	29.91	31.53
AT1G33790.2	Thale cress	cytosol	48.08	30.2
AT1G52070.1	Thale cress	extracellular	19.23	28.57
AT1G52120.2	Thale cress	cytosol	27.35	27.89
AT1G52060.1	Thale cress	extracellular	18.59	27.71
AT1G73040.1	Thale cress	cytosol	10.04	26.7
AT1G52050.1	Thale cress	extracellular	17.31	25.88
AT2G39310.4	Thale cress	cytosol	24.15	24.67
AT3G16430.2	Thale cress	cytosol	15.6	24.66
AT3G16470.1	Thale cress	cytosol	23.08	23.95
AT3G16450.2	Thale cress	cytosol	14.96	23.33
AT3G21380.1	Thale cress	cytosol	22.86	23.26
AT3G16420.1	Thale cress	cytosol	14.74	23.15
AT3G16440.2	Thale cress	cytosol	15.38	22.29
AT2G39330.2	Thale cress	cytosol	23.72	21.89
AT5G46000.1	Thale cress	cytosol	18.38	21.72
AT5G49860.1	Thale cress	cytosol, plastid	9.83	20.81
AT3G16460.1	Thale cress	cytosol	30.98	20.57
AT1G52030.2	Thale cress	cytosol	25.64	18.69
AT1G19715.3	Thale cress	cytoskeleton, cytosol, plastid	19.87	15.47
AT1G52000.2	Thale cress	cytosol	19.66	12.6
AT1G52040.1	Thale cress	cytosol	11.32	11.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	2.14	6.71

Protein Annotations

Gene3D:2.100.10.30	MapMan:35.1	EntrezGene:833842	UniProt:A0A1P8BGF4	ProteinID:AED94332.2	ProteinID:ANM70689.1
ArrayExpress:AT5G38540	EnsemblPlantsGene:AT5G38540	RefSeq:AT5G38540	TAIR:AT5G38540	RefSeq:AT5G38540-TAIR-G	EnsemblPlants:AT5G38540.1
TAIR:AT5G38540.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404
InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	RefSeq:NP_001318698.1	RefSeq:NP_001332276.1	PFAM:PF01419
PFscan:PS51752	PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI000848F57D

Description

Mannose-binding lectin superfamily protein [Source:TAIR;Acc:AT5G38540]

Coordinates

chr5:-:15426556..15430559

Molecular Weight (calculated)

52204.8 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.452

Length

468 amino acids

Sequence
(BLAST)

001: MIIKLGAKGI KLDERRLWDD GSDHDDVTKI YVKGGPQGIG SFYFNYVKSG NPKDGSIHGF FNYGFTQTFE INHLQDEHLE SVDAYYNKKS YGLQAIQFKT
101: NFRTSELMGY SYECTMFTLA VKGKKIIGFH GSDNVHIYSL GAYFTSITPT RLEVKGGMGG KKWEDGFDHD NVSKIQVLGG FEGILYIKVD YIKNGKLETG
201: LIHGDSGGDG FLQKMEINQS KNEYLVYVEG YYDDASETIQ GLHFQTNLNN PVMMGYKKGR KFLLASNGNK IIGFHGYADK SLNSLGAYFS RATPNKLECQ
301: GDCRGMSWDD GCNYDGVRKV FVDGIGNEIY TVRFEYDNGG KVEKTPYRRD VKNEKEFVLD YPNEFITSVE GTLAAPKSVN ITWITSLTFK TSKKRSSPTF
401: GSASSRKFVL EKNGSPLVGF HGYNSVGNTL NSLGAYYRPI PPTPDVEKLK AQGGVEELLG MMVVLSTV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.