Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G35940.1 | Thale cress | cytosol | 82.88 | 82.88 |
| AT1G52100.1 | Thale cress | cytosol | 67.12 | 68.19 |
| CDY02548 | Canola | cytosol | 58.11 | 59.31 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 27.93 | 56.11 |
| AT2G25980.1 | Thale cress | cytosol | 56.53 | 55.9 |
| AT3G16430.2 | Thale cress | cytosol | 34.46 | 51.69 |
| AT3G16420.1 | Thale cress | cytosol | 34.46 | 51.34 |
| AT3G16450.2 | Thale cress | cytosol | 33.33 | 49.33 |
| AT5G28520.1 | Thale cress | cytosol | 47.75 | 46.8 |
| AT3G16440.2 | Thale cress | cytosol | 33.11 | 45.51 |
| AT1G52050.1 | Thale cress | extracellular | 31.53 | 44.73 |
| AT1G52070.1 | Thale cress | extracellular | 30.41 | 42.86 |
| AT1G52060.1 | Thale cress | extracellular | 29.95 | 42.36 |
| AT1G61230.1 | Thale cress | cytosol | 43.69 | 38.42 |
| AT2G39310.4 | Thale cress | cytosol | 39.19 | 37.99 |
| AT1G60095.1 | Thale cress | cytosol | 50.45 | 37.27 |
| AT1G60110.2 | Thale cress | cytosol | 51.8 | 36.98 |
| AT1G60130.1 | Thale cress | cytosol | 49.77 | 36.83 |
| AT1G52120.2 | Thale cress | cytosol | 38.06 | 36.82 |
| AT5G49870.1 | Thale cress | cytosol | 49.77 | 36.77 |
| AT3G16470.1 | Thale cress | cytosol | 37.16 | 36.59 |
| AT5G49850.1 | Thale cress | cytosol | 48.42 | 36.07 |
| AT1G52110.1 | Thale cress | mitochondrion | 49.55 | 35.77 |
| AT1G57570.1 | Thale cress | mitochondrion | 48.87 | 35.34 |
| AT2G39330.2 | Thale cress | cytosol | 39.41 | 34.52 |
| AT5G38550.1 | Thale cress | cytosol | 46.17 | 34.51 |
| AT3G21380.1 | Thale cress | cytosol | 35.59 | 34.35 |
| AT1G73040.1 | Thale cress | cytosol | 12.61 | 31.82 |
| AT5G46000.1 | Thale cress | cytosol | 28.38 | 31.82 |
| AT1G33790.2 | Thale cress | cytosol | 51.8 | 30.87 |
| AT1G52130.1 | Thale cress | cytosol | 33.56 | 30.85 |
| AT5G38540.1 | Thale cress | cytosol | 31.53 | 29.91 |
| AT3G16460.1 | Thale cress | cytosol | 45.05 | 28.37 |
| AT1G52030.2 | Thale cress | cytosol | 37.84 | 26.17 |
| AT1G52040.1 | Thale cress | cytosol | 25.9 | 24.89 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 7.88 | 23.49 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 29.73 | 21.96 |
| AT1G52000.2 | Thale cress | cytosol | 32.21 | 19.59 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:833586 | ProteinID:AED94032.1 | ArrayExpress:AT5G35950 | EnsemblPlantsGene:AT5G35950 |
| RefSeq:AT5G35950 | TAIR:AT5G35950 | RefSeq:AT5G35950-TAIR-G | EnsemblPlants:AT5G35950.1 | TAIR:AT5G35950.1 | Unigene:At.55150 |
| ProteinID:BAB09251.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 | InterPro:IPR001229 | InterPro:IPR036404 |
| InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_198444.1 | PFAM:PF01419 | PFscan:PS51752 |
| PANTHER:PTHR23244 | PANTHER:PTHR23244:SF208 | UniProt:Q9FGC4 | SMART:SM00915 | SUPFAM:SSF51101 | UniParc:UPI00000A7181 |
| SEG:seg | : | : | : | : | : |
Description
JAL42Jacalin-related lectin 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGC4]
Coordinates
chr5:+:14104943..14106764
Molecular Weight (calculated)
49024.9 Da
IEP (calculated)
6.022
GRAVY (calculated)
-0.357
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MALMVKAEGG NGGKRWDDGF DYEGVTKIYV RGGLEGIQFI KFDYVKDGKT ITGPIHGVSG RGLTQTFEIN HLQKEYLLSI EGYYDISTGV IQSIQFKTNQ
101: QTSDMMGFNE GTKFSLRSMR GRIIGFHGFA DKNLYSLRAY YIRIPATKSA MDGGQNTGRG YDHGGDYDGV RKVYVTFDGT SIRNMRVDYD KVGQVECYEY
201: GVKIGTQNQF TINYPYECIT SVGGSYADTQ PYRCIVLRSL TFKTSNGRTS VFGKETGTTF LLESQGNAIV GFHGRVGSCV DSIGEYYAPF SPYPPPTEKL
301: EGQGGDGGDS WDDGAFLNVK KVCIGQGQFG IVSVKFEYEN DASEVVVGDE HGKATLLGYE EFELDYPSEY ITSVEACQDK VMGAETGVLT MLRFKTNIRI
401: SPSFGLKAGF NFVLEKEGHK INGFHGKSSS MLHQIGIHVI PITE
101: QTSDMMGFNE GTKFSLRSMR GRIIGFHGFA DKNLYSLRAY YIRIPATKSA MDGGQNTGRG YDHGGDYDGV RKVYVTFDGT SIRNMRVDYD KVGQVECYEY
201: GVKIGTQNQF TINYPYECIT SVGGSYADTQ PYRCIVLRSL TFKTSNGRTS VFGKETGTTF LLESQGNAIV GFHGRVGSCV DSIGEYYAPF SPYPPPTEKL
301: EGQGGDGGDS WDDGAFLNVK KVCIGQGQFG IVSVKFEYEN DASEVVVGDE HGKATLLGYE EFELDYPSEY ITSVEACQDK VMGAETGVLT MLRFKTNIRI
401: SPSFGLKAGF NFVLEKEGHK INGFHGKSSS MLHQIGIHVI PITE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.