Factsheet for AT1G52110.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G49860.1	Thale cress	cytosol, plastid	27.8	77.38
AT5G49870.1	Thale cress	cytosol	66.99	68.55
AT5G49850.1	Thale cress	cytosol	64.39	66.44
CDY69096	Canola	cytosol	53.33	56.07
CDY60590	Canola	cytosol	53.33	56.07
Bra018945.1-P	Field mustard	cytosol	46.5	54.27
AT1G60095.1	Thale cress	cytosol	52.52	53.74
AT1G61230.1	Thale cress	cytosol	44.06	53.66
CDY34134	Canola	cytosol	17.56	51.92
AT1G60130.1	Thale cress	cytosol	50.57	51.83
AT2G25980.1	Thale cress	cytosol	37.56	51.45
AT1G60110.2	Thale cress	cytosol	50.41	49.84
AT5G35950.1	Thale cress	cytosol	35.77	49.55
AT5G38550.1	Thale cress	cytosol	47.64	49.33
AT5G35940.1	Thale cress	cytosol	35.28	48.87
AT5G38540.1	Thale cress	cytosol	36.91	48.5
AT1G52130.1	Thale cress	cytosol	37.24	47.41
AT1G52100.1	Thale cress	cytosol	33.5	47.14
AT1G57570.1	Thale cress	mitochondrion	46.34	46.42
AT3G16430.2	Thale cress	cytosol	22.28	46.28
AT3G16420.1	Thale cress	cytosol	21.95	45.3
AT5G28520.1	Thale cress	cytosol	32.68	44.37
CDY47824	Canola	cytosol	25.53	43.98
AT1G52060.1	Thale cress	extracellular	21.79	42.68
AT3G16450.2	Thale cress	cytosol	20.81	42.67
AT3G16440.2	Thale cress	cytosol	22.28	42.41
AT1G52070.1	Thale cress	extracellular	21.63	42.22
AT1G52050.1	Thale cress	extracellular	21.3	41.85
AT2G39310.4	Thale cress	cytosol	28.62	38.43
AT1G52120.2	Thale cress	cytosol	26.99	36.17
AT3G16470.1	Thale cress	cytosol	26.34	35.92
AT3G21380.1	Thale cress	cytosol	26.18	35.0
AT2G39330.2	Thale cress	cytosol	28.78	34.91
AT1G33790.2	Thale cress	cytosol	42.28	34.9
AT3G16460.1	Thale cress	cytosol	33.01	28.79
AT5G46000.1	Thale cress	cytosol	18.54	28.79
AT1G52030.2	Thale cress	cytosol	25.85	24.77
AT1G73040.1	Thale cress	cytosol	6.67	23.3
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.2	21.48
AT1G52040.1	Thale cress	cytosol	15.94	21.21
AT1G19715.3	Thale cress	cytoskeleton, cytosol, plastid	20.49	20.97
AT1G52000.2	Thale cress	cytosol	20.49	17.26

Protein Annotations

Gene3D:2.100.10.30	MapMan:35.1	EntrezGene:3767441	ProteinID:AEE32756.1	ArrayExpress:AT1G52110	EnsemblPlantsGene:AT1G52110
RefSeq:AT1G52110	TAIR:AT1G52110	RefSeq:AT1G52110-TAIR-G	EnsemblPlants:AT1G52110.1	TAIR:AT1G52110.1	Unigene:At.74515
UniProt:F4IBA0	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404
InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	RefSeq:NP_175623.2	PFAM:PF01419	PFscan:PS51752
PANTHER:PTHR23244	PANTHER:PTHR23244:SF208	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0001A7B22A	SEG:seg

Description

Mannose-binding lectin superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IBA0]

Coordinates

chr1:-:19386709..19389740

Molecular Weight (calculated)

68343.5 Da

IEP (calculated)

7.960

GRAVY (calculated)

-0.317

Length

615 amino acids

Sequence
(BLAST)

001: MYNYSRSPGF YAKKILKMSI KRMKKKNEMS SVVDLIKIGR NCPSAIVQSD VSLSSTIIGQ RFLSKIYVQY SPKGIQSIRF SYINSGKPID GSLHGQSDNT
101: YTQTFEINHL KHEHLESVEG YYTDDTGIQA LQFKTNLRIS EPMGYHDGCT KFILAIEGKK IIGFHGLSFE GRRVYSLGAY FTWITPTRIE AIGGKVGTKW
201: DDGVDHAGFT KIHVRSGPKG IQYIKFLYVD KYGHLKDGPI HGSISGKVEG YYNDHDESGV IQALRFKTNI KTSELMGSNT GKKFRLAASE MKIVGFHGYA
301: GKNLRSLGAY FTPITPTKLA WQGTALGTLW DHGAFQAVRK LSVFEIGGYI TCLGITYDND GKVEKRDHGM QDGYPGEEVE FVVDYPNEFI TSVVGTMSTD
401: RVASLTFKTS KGRTSQRFGD RTANLVEFVL ENKDCAIVGF HGWWTPSYLT ALGAYSFPMP LSPASEKLEA QGGDGGASWD DGGNFEGVRK ICIGTGEIGI
501: VSVKFLYEND THEIVVGDHH GNKNLIKHEE FELDYPGEYL TLVEGSYDIV PGSEETEVII MLMFTTNMRA SPCYGLDDNP SFVLQKRGHK IVGFHGKSSK
601: MLHQLGIHVL PITHP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.