Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- extracellular 1
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G60130.1 | Thale cress | cytosol | 69.77 | 72.33 |
| AT1G60095.1 | Thale cress | cytosol | 69.29 | 71.71 |
| CDY60590 | Canola | cytosol | 54.98 | 58.46 |
| CDY69096 | Canola | cytosol | 54.82 | 58.29 |
| Bra018945.1-P | Field mustard | cytosol | 47.59 | 56.17 |
| AT1G61230.1 | Thale cress | cytosol | 45.5 | 56.04 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 19.61 | 55.2 |
| AT5G49870.1 | Thale cress | cytosol | 52.57 | 54.41 |
| AT2G25980.1 | Thale cress | cytosol | 39.23 | 54.34 |
| AT5G49850.1 | Thale cress | cytosol | 50.96 | 53.19 |
| AT5G35940.1 | Thale cress | cytosol | 37.62 | 52.7 |
| AT5G38550.1 | Thale cress | cytosol | 49.52 | 51.85 |
| AT5G35950.1 | Thale cress | cytosol | 36.98 | 51.8 |
| AT1G57570.1 | Thale cress | mitochondrion | 51.13 | 51.79 |
| AT1G52130.1 | Thale cress | cytosol | 39.71 | 51.14 |
| CDY34134 | Canola | cytosol | 16.88 | 50.48 |
| AT1G52110.1 | Thale cress | mitochondrion | 49.84 | 50.41 |
| AT5G38540.1 | Thale cress | cytosol | 37.46 | 49.79 |
| AT3G16430.2 | Thale cress | cytosol | 23.63 | 49.66 |
| AT1G52100.1 | Thale cress | cytosol | 34.89 | 49.66 |
| AT3G16420.1 | Thale cress | cytosol | 23.31 | 48.66 |
| AT1G52060.1 | Thale cress | extracellular | 23.63 | 46.82 |
| AT1G52070.1 | Thale cress | extracellular | 23.63 | 46.67 |
| AT5G28520.1 | Thale cress | cytosol | 33.76 | 46.36 |
| AT1G52050.1 | Thale cress | extracellular | 22.83 | 45.37 |
| AT3G16450.2 | Thale cress | cytosol | 21.7 | 45.0 |
| AT3G16440.2 | Thale cress | cytosol | 22.99 | 44.27 |
| CDY47824 | Canola | cytosol | 25.4 | 44.26 |
| AT2G39310.4 | Thale cress | cytosol | 30.87 | 41.92 |
| AT1G33790.2 | Thale cress | cytosol | 49.2 | 41.07 |
| AT3G16470.1 | Thale cress | cytosol | 28.3 | 39.02 |
| AT2G39330.2 | Thale cress | cytosol | 30.55 | 37.48 |
| AT3G21380.1 | Thale cress | cytosol | 27.33 | 36.96 |
| AT1G52120.2 | Thale cress | cytosol | 25.08 | 33.99 |
| AT5G46000.1 | Thale cress | cytosol | 20.74 | 32.58 |
| AT3G16460.1 | Thale cress | cytosol | 35.05 | 30.92 |
| AT1G52030.2 | Thale cress | cytosol | 28.62 | 27.73 |
| AT1G73040.1 | Thale cress | cytosol | 6.75 | 23.86 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 21.54 | 22.3 |
| AT1G52040.1 | Thale cress | cytosol | 16.4 | 22.08 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 4.66 | 19.46 |
| AT1G52000.2 | Thale cress | cytosol | 20.58 | 17.53 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:842306 | UniProt:A0A1P8AP29 | ProteinID:AAC24046.1 | ProteinID:AEE33660.1 |
| ProteinID:ANM58421.1 | ProteinID:ANM58422.1 | ArrayExpress:AT1G60110 | EnsemblPlantsGene:AT1G60110 | RefSeq:AT1G60110 | TAIR:AT1G60110 |
| RefSeq:AT1G60110-TAIR-G | EnsemblPlants:AT1G60110.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 | InterPro:IPR001229 |
| InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_001319274.1 | RefSeq:NP_001320856.1 |
| RefSeq:NP_176219.2 | PFAM:PF01419 | PFscan:PS51752 | PANTHER:PTHR23244 | PANTHER:PTHR23244:SF208 | SMART:SM00915 |
| SUPFAM:SSF51101 | UniParc:UPI00084842AB | SEG:seg | : | : | : |
Description
Mannose-binding lectin superfamily protein [Source:TAIR;Acc:AT1G60110]
Coordinates
chr1:+:22168424..22170760
Molecular Weight (calculated)
69040.3 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.459
Length
622 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDSKTFLKG LETSPSLFLS LSFEMAQRLE AEGNKNFKGK SKWDDGSDKD DIGKISVRCE DGGITYIRFD YIKSGQPQYN TFPGNPGRGI LQTFDINHKN
101: DEHLESVEGY YDPKSDAIKG LQFKTNMRIS ELIGYANDGA TKFSLAVEGK KIIGFHGAYN TYLNSLGAYV TWIVPTKLKA KGGKGGKEWN DGADHEGITK
201: IYVRGGYEGL QYVKFDYIKD GQQIYGSPHG VRGRGFTELF EINHLDKEYL ISVEGYYDEG ESGVIQGIQF KTNIRTSELM GDNRGRKFSL AANGKKIIGF
301: HGYAEKNLNS LGAYFTTSPF TKLEVGTTSA DLWDDGTFDG IRNVYIHYDG DAVCCVEVDY DNKGKVEKRE HGIMIAPFIE RGEFVVDYPN EFITSVEVTI
401: SKQNDSPVPS LTSETVASLT FKTSKGRTSS TFGSPATKKF VLQSKGCGVV GFLGRSSYYT YALGAHFCPL PPLPDGEKVE AKGGDGGASW DDGRFDCIRK
501: IYIGHSEMGI AFVKFLYDKD NKVVVGDDHG SKTLLGVDEF ELEHPDEYLI SVEGSYDVVD GSESEVIRML RFKTNMRTSQ LFGHETTSNF TLQKECHKIV
601: GFHGKIGEML HQIGVHVLPI TD
101: DEHLESVEGY YDPKSDAIKG LQFKTNMRIS ELIGYANDGA TKFSLAVEGK KIIGFHGAYN TYLNSLGAYV TWIVPTKLKA KGGKGGKEWN DGADHEGITK
201: IYVRGGYEGL QYVKFDYIKD GQQIYGSPHG VRGRGFTELF EINHLDKEYL ISVEGYYDEG ESGVIQGIQF KTNIRTSELM GDNRGRKFSL AANGKKIIGF
301: HGYAEKNLNS LGAYFTTSPF TKLEVGTTSA DLWDDGTFDG IRNVYIHYDG DAVCCVEVDY DNKGKVEKRE HGIMIAPFIE RGEFVVDYPN EFITSVEVTI
401: SKQNDSPVPS LTSETVASLT FKTSKGRTSS TFGSPATKKF VLQSKGCGVV GFLGRSSYYT YALGAHFCPL PPLPDGEKVE AKGGDGGASW DDGRFDCIRK
501: IYIGHSEMGI AFVKFLYDKD NKVVVGDDHG SKTLLGVDEF ELEHPDEYLI SVEGSYDVVD GSESEVIRML RFKTNMRTSQ LFGHETTSNF TLQKECHKIV
601: GFHGKIGEML HQIGVHVLPI TD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.