Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G35940.1 | Thale cress | cytosol | 69.57 | 68.47 |
| AT5G35950.1 | Thale cress | cytosol | 68.19 | 67.12 |
| AT2G25980.1 | Thale cress | cytosol | 58.35 | 56.79 |
| AT3G16430.2 | Thale cress | cytosol | 36.84 | 54.39 |
| AT3G16420.1 | Thale cress | cytosol | 35.7 | 52.35 |
| AT3G16450.2 | Thale cress | cytosol | 33.64 | 49.0 |
| AT5G49860.1 | Thale cress | cytosol, plastid | 24.71 | 48.87 |
| AT5G28520.1 | Thale cress | cytosol | 49.2 | 47.46 |
| AT3G16440.2 | Thale cress | cytosol | 32.95 | 44.58 |
| CDY43910 | Canola | cytosol | 71.17 | 41.91 |
| Bra030443.1-P | Field mustard | cytosol | 71.17 | 41.91 |
| AT1G52060.1 | Thale cress | extracellular | 29.29 | 40.76 |
| AT1G61230.1 | Thale cress | cytosol | 46.68 | 40.4 |
| AT1G52050.1 | Thale cress | extracellular | 28.83 | 40.26 |
| AT1G52070.1 | Thale cress | extracellular | 28.83 | 40.0 |
| AT2G39310.4 | Thale cress | cytosol | 40.96 | 39.08 |
| AT3G16470.1 | Thale cress | cytosol | 39.82 | 38.58 |
| AT3G21380.1 | Thale cress | cytosol | 39.82 | 37.83 |
| AT1G60095.1 | Thale cress | cytosol | 51.49 | 37.44 |
| AT1G60130.1 | Thale cress | cytosol | 50.11 | 36.5 |
| AT2G39330.2 | Thale cress | cytosol | 42.33 | 36.49 |
| AT1G57570.1 | Thale cress | mitochondrion | 51.03 | 36.32 |
| AT1G60110.2 | Thale cress | cytosol | 49.66 | 34.89 |
| AT1G52120.2 | Thale cress | cytosol | 36.61 | 34.86 |
| AT5G49850.1 | Thale cress | cytosol | 47.14 | 34.56 |
| AT5G49870.1 | Thale cress | cytosol | 47.37 | 34.44 |
| AT5G38550.1 | Thale cress | cytosol | 46.0 | 33.84 |
| AT1G52110.1 | Thale cress | mitochondrion | 47.14 | 33.5 |
| AT5G46000.1 | Thale cress | cytosol | 30.21 | 33.33 |
| AT1G52130.1 | Thale cress | cytosol | 35.24 | 31.88 |
| AT1G33790.2 | Thale cress | cytosol | 53.55 | 31.41 |
| AT5G38540.1 | Thale cress | cytosol | 32.72 | 30.56 |
| AT3G16460.1 | Thale cress | cytosol | 45.31 | 28.09 |
| AT1G52030.2 | Thale cress | cytosol | 39.82 | 27.1 |
| AT1G73040.1 | Thale cress | cytosol | 10.76 | 26.7 |
| AT1G52040.1 | Thale cress | cytosol | 25.63 | 24.24 |
| AT1G19715.3 | Thale cress | cytoskeleton, cytosol, plastid | 31.58 | 22.96 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 7.09 | 20.81 |
| AT1G52000.2 | Thale cress | cytosol | 32.27 | 19.32 |
Protein Annotations
| Gene3D:2.100.10.30 | MapMan:35.1 | EntrezGene:841640 | ProteinID:AEE32754.1 | ArrayExpress:AT1G52100 | EnsemblPlantsGene:AT1G52100 |
| RefSeq:AT1G52100 | TAIR:AT1G52100 | RefSeq:AT1G52100-TAIR-G | EnsemblPlants:AT1G52100.1 | TAIR:AT1G52100.1 | Unigene:At.37669 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0030246 | InterPro:IPR001229 |
| InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | RefSeq:NP_175622.3 | PFAM:PF01419 |
| PO:PO:0009006 | PO:PO:0009025 | PO:PO:0020030 | PO:PO:0020100 | PFscan:PS51752 | PANTHER:PTHR23244 |
| PANTHER:PTHR23244:SF208 | SMART:SM00915 | SUPFAM:SSF51101 | UniParc:UPI0001E92A89 | SEG:seg | : |
Description
Mannose-binding lectin superfamily protein [Source:TAIR;Acc:AT1G52100]
Coordinates
chr1:-:19383122..19385533
Molecular Weight (calculated)
47660.4 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.340
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MALKVEAKGG KVGIQWDDGS DYHDVTKIYV RGGLEGIQFI KFEYVKAGKK VIGPIHGASG RGFTETFEIN NLEKEYLLSI EGYYNASTGV IQCLQFITNK
101: KTYDPIGYNE GARFTLSASR SKIIGFHGFA DKYLNSLGAY FIKIPSIQSA IEGAKTTGKG FDDGGDYDGI RKVYVTTDGS AIRHVRFDYD KAGQVETRER
201: GAKTGTQHEF TVNHPYEYIT SVEGTYAHTQ PYNCVVLTSL TFKTSKGRAS PAIGKVTGSK FKLERQGDAI VGFHGRVGSC IDGIGVYYAP LPPSPPPPEK
301: LQGQGGDGGD SWDDGAFKNV KKIYVGQGDV GIAAVKFEYE TYTSEVILAE RHGKETLLGY EDEYITAVEG CHDKVIGSET GVITMLRFKT NKRNSPPFGL
401: ESAFSFILEK DGHKIVGFHG KASTLLHQIG VHVTAIA
101: KTYDPIGYNE GARFTLSASR SKIIGFHGFA DKYLNSLGAY FIKIPSIQSA IEGAKTTGKG FDDGGDYDGI RKVYVTTDGS AIRHVRFDYD KAGQVETRER
201: GAKTGTQHEF TVNHPYEYIT SVEGTYAHTQ PYNCVVLTSL TFKTSKGRAS PAIGKVTGSK FKLERQGDAI VGFHGRVGSC IDGIGVYYAP LPPSPPPPEK
301: LQGQGGDGGD SWDDGAFKNV KKIYVGQGDV GIAAVKFEYE TYTSEVILAE RHGKETLLGY EDEYITAVEG CHDKVIGSET GVITMLRFKT NKRNSPPFGL
401: ESAFSFILEK DGHKIVGFHG KASTLLHQIG VHVTAIA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.