Factsheet for GSMUA_Achr1P05130_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23344	Soybean	cytosol	54.82	59.67
AT1G73040.1	Thale cress	cytosol	49.24	55.11
VIT_09s0002g02610.t01	Wine grape	cytosol	58.38	54.76
Bra008068.1-P	Field mustard	cytosol	48.22	53.98
Solyc03g121300.2.1	Tomato	cytosol	52.79	51.74
PGSC0003DMT400006686	Potato	cytosol	51.78	50.75
VIT_09s0002g02620.t01	Wine grape	cytosol	48.22	46.34
Os05t0541800-01	Rice	cytosol, mitochondrion, plastid	21.32	45.16
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	30.96	44.85
GSMUA_Achr4P29370_001	Banana	cytosol	21.83	43.43
OQU78369	Sorghum	mitochondrion	43.15	41.06
CDY48032	Canola	cytosol, extracellular, nucleus	47.21	40.43
CDX82115	Canola	extracellular	47.72	37.6
TraesCS1D01G368600.1	Wheat	mitochondrion	41.62	37.27
KXG33219	Sorghum	mitochondrion	39.09	37.02
TraesCS1B01G380700.1	Wheat	mitochondrion	41.12	36.82
TraesCS1A01G363600.1	Wheat	cytosol	41.12	36.82
Zm00001d009416_P001	Maize	cytosol, mitochondrion	42.64	36.36
GSMUA_Achr8P15120_001	Banana	cytosol	23.86	35.34
GSMUA_Achr9P10840_001	Banana	cytosol	24.87	34.51
GSMUA_AchrUn_...	Banana	cytosol	20.3	32.79
GSMUA_Achr9P10720_001	Banana	cytosol	28.93	32.76
HORVU1Hr1G079360.2	Barley	extracellular	41.62	31.3
Os04t0200400-00	Rice	mitochondrion	28.93	30.16
Os04t0330200-01	Rice	mitochondrion	28.93	30.16
GSMUA_Achr7P06430_001	Banana	plastid	21.32	28.97
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	27.41	27.98
GSMUA_Achr8P20690_001	Banana	plastid	26.9	27.6
GSMUA_Achr3P20760_001	Banana	extracellular	26.4	25.49
GSMUA_Achr9P10790_001	Banana	cytosol	24.37	23.41
Os01t0706800-00	Rice	mitochondrion	27.92	20.52
GSMUA_Achr9P10830_001	Banana	cytosol	24.87	20.08
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	27.92	20.07
GSMUA_AchrUn_...	Banana	cytosol	27.92	19.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	5.58	7.38

Protein Annotations

EnsemblPlants:GSMUA_Achr1P05130_001	EnsemblPlants:GSMUA_Achr1T05130_001	EnsemblPlantsGene:GSMUA_Achr1G05130_001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
PANTHER:PTHR45172	PFAM:PF01419	PFscan:PS51752	SEG:seg	SMART:SM00915	SUPFAM:SSF51101
UniParc:UPI000294C9ED	UniProt:M0RX71	MapMan:35.1	:	:	:

Description

Putative Agglutinin alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr1G05130_001]

Coordinates

chr1:-:4238387..4239210

Molecular Weight (calculated)

21374.8 Da

IEP (calculated)

9.840

GRAVY (calculated)

-0.322

Length

197 amino acids

Sequence
(BLAST)

001: MWQTQKVVGS SKTVKVGPWG GHGGSGWDDG IHTGIREITL VYDRCIDSIR IEYDKNGKPF LAEKHGGNGG SMTAKIKLES PEEYLMTVSG HYCPVVYGGS
101: PVIRSLAFKS NKRTFGPFGV EEGTQFTVPM DGGMVVGFTG GCGWYLDAIG WCLSPIRSVK LCNMVHQKLQ KIGTMASKTL GNKHGKHATA KSRKTYA

Best Arabidopsis Sequence Match ( AT1G73040.1 )
(BLAST)

001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA

Arabidopsis Description

JAL19Jacalin-related lectin 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.