Factsheet for GSMUA_Achr7P06430_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
extracellular 1
mitochondrion 1
cytosol 2
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P29370_001	Banana	cytosol	27.59	40.4
GSMUA_Achr3P20760_001	Banana	extracellular	33.79	24.02
GSMUA_AchrUn_...	Banana	cytosol	19.31	22.95
GSMUA_Achr9P10840_001	Banana	cytosol	21.38	21.83
GSMUA_Achr1P05130_001	Banana	cytosol	28.97	21.32
GSMUA_Achr9P10720_001	Banana	cytosol	24.83	20.69
GSMUA_Achr8P15120_001	Banana	cytosol	15.86	17.29
GSMUA_Achr9P10790_001	Banana	cytosol	21.38	15.12
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	20.0	15.03
GSMUA_Achr8P20690_001	Banana	plastid	19.31	14.58
GSMUA_Achr9P10830_001	Banana	cytosol	20.69	12.3
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	20.0	10.58
GSMUA_AchrUn_...	Banana	cytosol	20.69	10.49
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	7.59	7.38

Protein Annotations

EnsemblPlants:GSMUA_Achr7P06430_001	EnsemblPlants:GSMUA_Achr7T06430_001	EnsemblPlantsGene:GSMUA_Achr7G06430_001	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
PANTHER:PTHR45172	PFAM:PF01419	PFscan:PS51752	SEG:seg	SMART:SM00915	SUPFAM:SSF51101
UniParc:UPI000294A20E	UniProt:M0TF83	MapMan:35.2	:	:	:

Description

Putative Mannose/glucose-specific lectin (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr7G06430_001]

Coordinates

chr7:+:4725189..4725806

Molecular Weight (calculated)

15672.4 Da

IEP (calculated)

9.212

GRAVY (calculated)

-0.326

Length

145 amino acids

Sequence
(BLAST)

001: MATPSTPSKS YTTSMAPQHS HTGTVAMATT STAFEPWEYL TSISGHYGPV EQRGAVVIRS LKFGTNRTNY GPFGREEGTP FCFNFHSGLD FGGFHGRSTG
101: SHLSALGIYV KSISLKHHFK PDPPQRHAAP PRLFSASVDP CACVL

Best Arabidopsis Sequence Match ( AT1G05760.1 )
(BLAST)

001: MKIGPVGKHD ARSTTIVNWD EGSHDGFISQ IFLSHGVAGI MSIQFQFVMD GKLVLSDRHG PFSGNMFDVI ELNYPHEYIT GISGEYYKYE ANNPHMRSLK
101: FNTNTSEYGP FGTSGSSNDK FAFKLGKSPQ FGGFHGTYDA SGLQYIGVYL RPKTVLPKID TGNAEETESK IVLG

Arabidopsis Description

RTM1Mannose-binding lectin superfamily protein [Source:TAIR;Acc:AT1G05760]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.