Factsheet for PGSC0003DMT400006686

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g121300.2.1	Tomato	cytosol	96.02	96.02
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	64.68	95.59
KRH23344	Soybean	cytosol	53.23	59.12
AT1G73040.1	Thale cress	cytosol	47.76	54.55
Bra008068.1-P	Field mustard	cytosol	47.26	53.98
VIT_09s0002g02610.t01	Wine grape	cytosol	54.23	51.9
GSMUA_Achr1P05130_001	Banana	cytosol	50.75	51.78
VIT_09s0002g02620.t01	Wine grape	cytosol	48.76	47.8
OQU78369	Sorghum	mitochondrion	42.79	41.55
CDY48032	Canola	cytosol, extracellular, nucleus	47.26	41.3
Os05t0541800-01	Rice	cytosol, mitochondrion, plastid	18.91	40.86
CDX82115	Canola	extracellular	48.26	38.8
TraesCS1D01G368600.1	Wheat	mitochondrion	41.79	38.18
TraesCS1A01G363600.1	Wheat	cytosol	40.8	37.27
TraesCS1B01G380700.1	Wheat	mitochondrion	40.8	37.27
Zm00001d009416_P001	Maize	cytosol, mitochondrion	42.79	37.23
KXG33219	Sorghum	mitochondrion	38.31	37.02
Os04t0330200-01	Rice	mitochondrion	30.85	32.8
Os04t0200400-00	Rice	mitochondrion	30.85	32.8
HORVU1Hr1G079360.2	Barley	extracellular	41.79	32.06
Os01t0706800-00	Rice	mitochondrion	26.37	19.78
PGSC0003DMT400044313	Potato	cytosol	28.36	18.81
PGSC0003DMT400009575	Potato	cytosol	29.85	18.29
PGSC0003DMT400009447	Potato	cytosol, mitochondrion, plastid	19.9	15.15
PGSC0003DMT400021541	Potato	cytosol	34.83	10.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400006686	EnsemblPlantsGene:PGSC0003DMG402002599	EntrezGene:102598450	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
PANTHER:PTHR45172	PFAM:PF01419	PFscan:PS51752	PGSC:PGSC0003DMG402002599	RefSeq:XP_006343016.1	SMART:SM00915
SUPFAM:SSF51101	UniParc:UPI00029595F1	UniProt:M0ZRU0	MapMan:35.1	:	:

Description

Jacalin-domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG402002599]

Coordinates

chr3:+:60581929..60585706

Molecular Weight (calculated)

21945.0 Da

IEP (calculated)

9.618

GRAVY (calculated)

-0.420

Length

201 amino acids

Sequence
(BLAST)

001: MDRGEGSEIK KRIVIGSWGG HGGSPWDDGS FNGVREISLV YSLCIDSITV VYDQNGQPYQ AEKHGGVGGS RTAQIKLQFP EEYLTSVSGY YSPVVYGGSP
101: VIRSLTFSSN KRKFGPFGVE GGTPFSMPME GGQIVGFKGR SGWYLDAIGF YIAKVKTTTV LQKAQQSLVK LASSVSMNYR SGDEPKKYSY FYKPTNPKTE
201: A

Best Arabidopsis Sequence Match ( AT1G73040.1 )
(BLAST)

001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA

Arabidopsis Description

JAL19Jacalin-related lectin 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.