Factsheet for PGSC0003DMT400009447

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g080410.1.1	Tomato	cytosol	81.06	69.26
PGSC0003DMT400009575	Potato	cytosol	65.15	52.44
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	15.15	29.41
GSMUA_Achr9P10840_001	Banana	cytosol	14.77	27.46
GSMUA_AchrUn_...	Banana	cytosol	11.36	24.59
TraesCS6A01G105700.1	Wheat	cytosol	12.88	24.46
TraesCS3B01G032600.1	Wheat	cytosol	13.26	23.65
TraesCS6B01G135000.1	Wheat	cytosol	12.88	23.29
TraesCS7A01G256100.1	Wheat	cytosol	13.26	22.58
HORVU7Hr1G109850.2	Barley	cytosol	13.64	22.5
TraesCS7D01G254500.1	Wheat	cytosol	12.12	20.65
TraesCS3D01G028700.1	Wheat	cytosol	10.98	20.57
TraesCS3B01G052500.1	Wheat	cytosol	10.98	20.57
TraesCS3D01G030000.1	Wheat	cytosol	12.88	20.48
HORVU7Hr1G052850.1	Barley	cytosol	11.74	20.0
TraesCS7B01G152700.1	Wheat	cytosol	11.74	20.0
PGSC0003DMT400006686	Potato	cytosol	15.15	19.9
GSMUA_Achr9P10790_001	Banana	cytosol	14.39	18.54
GSMUA_Achr8P15120_001	Banana	cytosol	8.33	16.54
TraesCS3A01G131600.1	Wheat	cytosol	11.36	16.22
GSMUA_Achr8P20690_001	Banana	plastid	11.74	16.15
GSMUA_Achr9P10720_001	Banana	cytosol	10.61	16.09
GSMUA_Achr9P10830_001	Banana	cytosol	14.77	15.98
PGSC0003DMT400021541	Potato	cytosol	38.64	15.6
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	11.36	15.54
TraesCS3B01G031800.1	Wheat	cytosol, plastid	11.74	12.81
TraesCS3D01G029200.1	Wheat	cytosol	10.98	12.34
PGSC0003DMT400044313	Potato	cytosol	13.26	11.55
TraesCS3B01G165200.1	Wheat	cytosol	12.12	11.03
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	11.36	10.95
GSMUA_AchrUn_...	Banana	cytosol	11.36	10.49
TraesCS1D01G367900.1	Wheat	cytosol	12.12	10.0
TraesCS3B01G053100.1	Wheat	cytosol, plastid	6.44	8.72

Protein Annotations

EnsemblPlants:PGSC0003DMT400009447	EnsemblPlantsGene:PGSC0003DMG400003680	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419
PFscan:PS51752	PGSC:PGSC0003DMG400003680	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI00029551A3	UniProt:M0ZW97
MapMan:35.1	:	:	:	:	:

Description

Agglutinin isoform [Source:PGSC_GENE;Acc:PGSC0003DMG400003680]

Coordinates

chr4:+:69789724..69790681

Molecular Weight (calculated)

28859.7 Da

IEP (calculated)

8.736

GRAVY (calculated)

-0.120

Length

264 amino acids

Sequence
(BLAST)

001: PGEYLTGIRG KLGYYVGNLV VKSLYFSTNL KCYGPVGGNE VGGTSFSLVL KVNGAILGFH GRSGAFLYAI GVYLQNVTPP EQIKQLKQPK VEESPDEFPN
101: KLDVMKCIQA RSPGPWGGYS GKGWDDGVFC TIKQVHIYMN TIISAICGIQ IEYEKKDKMS VWSQLHGGFG IGAGNHDNVI KKIYVDGENE FLIGIEGYYS
201: LVKENGGLDT LRQIAFYTNK GKYGPYGIEI GTYFSSSAAR GKIVGFHGKS GVFLNAIGVH MEYF

Best Arabidopsis Sequence Match ( AT1G19715.2 )
(BLAST)

001: MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT ICVRSLTFES NRRKYGPFGV DSGTFFALPK
101: SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE
201: KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI
301: KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH NNSGTAQIEN SPWANKLVLA ANGHGEEVDR
401: GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT HRIKFEYPDE SITCISGYYG PLNNSDRYNV
501: VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL F

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.