Factsheet for PGSC0003DMT400044313

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G105700.1	Wheat	cytosol	16.17	35.25
TraesCS6B01G135000.1	Wheat	cytosol	16.5	34.25
GSMUA_Achr9P10840_001	Banana	cytosol	15.84	33.8
HORVU7Hr1G109850.2	Barley	cytosol	16.5	31.25
TraesCS7D01G254500.1	Wheat	cytosol	15.84	30.97
HORVU7Hr1G052850.1	Barley	cytosol	15.84	30.97
TraesCS7B01G152700.1	Wheat	cytosol	15.84	30.97
TraesCS7A01G256100.1	Wheat	cytosol	15.84	30.97
GSMUA_Achr9P10720_001	Banana	cytosol	17.49	30.46
TraesCS3B01G032600.1	Wheat	cytosol	14.85	30.41
TraesCS3D01G028700.1	Wheat	cytosol	13.53	29.08
TraesCS3B01G052500.1	Wheat	cytosol	13.53	29.08
GSMUA_Achr8P15120_001	Banana	cytosol	12.54	28.57
PGSC0003DMT400006686	Potato	cytosol	18.81	28.36
GSMUA_Achr9P10790_001	Banana	cytosol	18.81	27.8
TraesCS3D01G030000.1	Wheat	cytosol	14.85	27.11
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	16.17	25.39
TraesCS3A01G131600.1	Wheat	cytosol	15.18	24.86
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	10.89	24.26
GSMUA_AchrUn_...	Banana	cytosol	9.57	23.77
GSMUA_Achr8P20690_001	Banana	plastid	14.85	23.44
GSMUA_Achr9P10830_001	Banana	cytosol	18.15	22.54
TraesCS3B01G031800.1	Wheat	cytosol, plastid	17.49	21.9
PGSC0003DMT400009575	Potato	cytosol	22.11	20.43
TraesCS3D01G029200.1	Wheat	cytosol	15.84	20.43
TraesCS3B01G165200.1	Wheat	cytosol	18.48	19.31
GSMUA_AchrUn_...	Banana	cytosol	17.82	18.88
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	16.83	18.61
TraesCS3B01G053100.1	Wheat	cytosol, plastid	11.55	17.95
TraesCS1D01G367900.1	Wheat	cytosol	18.15	17.19
PGSC0003DMT400009447	Potato	cytosol, mitochondrion, plastid	11.55	13.26
PGSC0003DMT400021541	Potato	cytosol	19.8	9.17

Protein Annotations

EntrezGene:102578559	Gene3D:2.100.10.30	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	UniProt:M1BFZ7
PFAM:PF01419	EnsemblPlantsGene:PGSC0003DMG404017205	PGSC:PGSC0003DMG404017205	EnsemblPlants:PGSC0003DMT400044313	PFscan:PS51752	PANTHER:PTHR45172
InterPro:RX-like_CC	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI000296A4B6	RefSeq:XP_006354454.1	SEG:seg

Description

Agglutinin isoform [Source:PGSC_GENE;Acc:PGSC0003DMG404017205]

Coordinates

chr9:+:56772181..56774374

Molecular Weight (calculated)

33408.1 Da

IEP (calculated)

6.178

GRAVY (calculated)

-0.147

Length

303 amino acids

Sequence
(BLAST)

001: MAEAAITKAI SKITEQAIFL YGLNEQVREL VTELGRMRAF LKDVDTRKQK GERVKNWADE IRDLAQDAEG VVEKFAAEVI QRSNEEDTVY CFCTMLSNVV
101: KEVIPRYKIG WDIGKINKRL KSLTESLTTY GVVLPDTNEE ETSITREVKL QSGAIGVERW GGSGGSHWNY RPKGVVKQIV VKHGLIIDSI MFKSSEENGV
201: MESKTFGGSG GHLTTEINID SPSEYLTGLS GTYGLYGPYL IIKSIKLHTN LSHHGPMGSV IETDTNFSFI MQGGVVVGFH GFSGLFLDAV GLYVMPTSIT
301: LPS

Best Arabidopsis Sequence Match ( AT1G73040.1 )
(BLAST)

001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA

Arabidopsis Description

JAL19Jacalin-related lectin 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.