Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G135000.1 | Wheat | cytosol | 96.4 | 91.78 |
| TraesCS7A01G256100.1 | Wheat | cytosol | 69.06 | 61.94 |
| GSMUA_Achr4P29370_001 | Banana | cytosol | 38.13 | 53.54 |
| HORVU7Hr1G109850.2 | Barley | cytosol | 56.83 | 49.38 |
| TraesCS3A01G131600.1 | Wheat | cytosol | 63.31 | 47.57 |
| TraesCS1A01G363600.1 | Wheat | cytosol | 38.85 | 24.55 |
| PGSC0003DMT400044313 | Potato | cytosol | 35.25 | 16.17 |
| PGSC0003DMT400009575 | Potato | cytosol | 33.09 | 14.02 |
| Solyc04g080420.2.1 | Tomato | cytosol, nucleus | 31.65 | 12.94 |
| PGSC0003DMT400009447 | Potato | cytosol, mitochondrion, plastid | 24.46 | 12.88 |
| Solyc04g080410.1.1 | Tomato | cytosol | 25.18 | 11.33 |
| TraesCS1A01G325500.1 | Wheat | cytosol | 38.85 | 9.08 |
| TraesCS3A01G321000.1 | Wheat | plastid | 16.55 | 5.1 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G105700.1 | EnsemblPlantsGene:TraesCS6A01G105700 | Gene3D:2.100.10.30 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0030246 |
| InterPro:IPR001229 | InterPro:IPR036404 | InterPro:Jacalin-like_lectin_dom | InterPro:Jacalin-like_lectin_dom_plant | InterPro:Jacalin-like_lectin_dom_sf | PANTHER:PTHR45172 |
| PFAM:PF01419 | PFscan:PS51752 | SEG:seg | SMART:SM00915 | SUPFAM:SSF51101 | TIGR:cd09612 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:73980175..73980698
Molecular Weight (calculated)
15134.4 Da
IEP (calculated)
10.462
GRAVY (calculated)
-0.356
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPCGGGGGK PWKMDMRGVN RIIKVVVRHG AAVDAMSVLY ERDGQKEKTK LWGGSGGKRS EICLEPGEHL TNIRGHYGFF NGWFVIRSLT FVSNRRTFGP
101: YREETGTAFK LPGAGGKILG FHGRSEGLLD ALGTYVKMG
101: YREETGTAFK LPGAGGKILG FHGRSEGLLD ALGTYVKMG
001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA
Arabidopsis Description
JAL19Jacalin-related lectin 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSM3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.