Factsheet for Solyc04g080420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
extracellular 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009575	Potato	cytosol	82.94	85.98
Solyc04g080410.1.1	Tomato	cytosol	54.71	60.19
GSMUA_Achr9P10840_001	Banana	cytosol	15.88	38.03
GSMUA_Achr8P15120_001	Banana	cytosol	13.24	33.83
TraesCS6B01G135000.1	Wheat	cytosol	13.82	32.19
TraesCS3B01G032600.1	Wheat	cytosol	13.82	31.76
TraesCS6A01G105700.1	Wheat	cytosol	12.94	31.65
TraesCS7A01G256100.1	Wheat	cytosol	14.41	31.61
HORVU7Hr1G109850.2	Barley	cytosol	14.41	30.62
TraesCS7B01G152700.1	Wheat	cytosol	13.53	29.68
TraesCS7D01G254500.1	Wheat	cytosol	13.53	29.68
HORVU7Hr1G052850.1	Barley	cytosol	13.53	29.68
GSMUA_AchrUn_...	Banana	cytosol	10.59	29.51
TraesCS3D01G030000.1	Wheat	cytosol	14.12	28.92
GSMUA_Achr9P10720_001	Banana	cytosol	14.41	28.16
Solyc03g121300.2.1	Tomato	cytosol	16.47	27.86
TraesCS3D01G028700.1	Wheat	cytosol	11.47	27.66
TraesCS3B01G052500.1	Wheat	cytosol	11.47	27.66
GSMUA_Achr8P20690_001	Banana	plastid	15.29	27.08
GSMUA_Achr8P15130_001	Banana	cytosol, extracellular, vacuole	15.29	26.94
GSMUA_Achr9P10790_001	Banana	cytosol	15.29	25.37
GSMUA_Achr9P10830_001	Banana	cytosol	16.18	22.54
TraesCS3A01G131600.1	Wheat	cytosol	11.47	21.08
TraesCS3B01G031800.1	Wheat	cytosol, plastid	14.41	20.25
GSMUA_AchrUn_...	Banana	extracellular, plastid, vacuole	15.59	19.34
Solyc10g078600.1.1	Tomato	cytosol	36.76	19.2
GSMUA_AchrUn_...	Banana	cytosol	15.0	17.83
TraesCS3D01G029200.1	Wheat	cytosol	12.06	17.45
TraesCS3B01G053100.1	Wheat	cytosol, plastid	9.12	15.9
TraesCS1D01G367900.1	Wheat	cytosol	14.41	15.31
TraesCS3B01G165200.1	Wheat	cytosol	12.35	14.48

Protein Annotations

EnsemblPlants:Solyc04g080420.2.1	EnsemblPlantsGene:Solyc04g080420.2	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419
PFscan:PS51752	SEG:seg	SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0002765881	UniProt:K4BVC1
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:64593213..64595412

Molecular Weight (calculated)

37583.8 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.301

Length

340 amino acids

Sequence
(BLAST)

001: MGNLVSYDEV DQIMVEAWGG IGGLEWNYKF KSPIKEILIN HGDVIDSIMF ITMNERGDRI ESPRFGGNGG RRDKVVIKET SLEFLVGIKG RYGNYKGNLV
101: VKSLSFVTNA KNIYGPFGKE DGTPFSFVIK EGGAIVGLHG LADSYLDAIG VYVNKLTVPK KDEKKLEPNE PIVEEIEIHD KMDVMKTIVP RSAGPWGGCS
201: GKGWDDGVFC TIKQVQVHEA LHSSVISAIQ IEYENKLDKS SFWSQLHGHE HGAKKTTKIN VDGTDEFFIG IEGYYSPLND NGGQDTIRQI TFYTNKGKYG
301: PYGIEIGTYF SSSAARGKIV GFHGKSGLFL NAVGVHMEYF

Best Arabidopsis Sequence Match ( AT1G19715.3 )
(BLAST)

001: MVLTSSYSVE GKPASLGPWG GQSGHAWDDG MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT
101: ICVRSLTFES NRRKYGPFGV DSGTFFALPK SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL
201: RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH
301: DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH
401: NNSGTAQIEN SPWANKLVLA ANGHGEEVDR GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT
501: HRIKFEYPDE SITCISGYYG PLNNSDRYNV VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL
601: F

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.