Factsheet for PGSC0003DMT400021541

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078600.1.1	Tomato	cytosol	94.34	94.78
KRG98276	Soybean	cytosol	51.07	56.71
KRH30293	Soybean	cytosol	50.15	55.69
KRH72685	Soybean	peroxisome	46.48	55.58
VIT_18s0001g13210.t01	Wine grape	cytosol	56.88	55.52
Bra025760.1-P	Field mustard	extracellular	50.46	54.37
AT1G19715.3	Thale cress	cytoskeleton, cytosol, plastid	49.24	53.58
Bra016496.1-P	Field mustard	cytosol	47.09	52.83
CDY63700	Canola	cytosol	47.09	52.65
CDX96652	Canola	extracellular	47.09	50.08
Zm00001d038651_P004	Maize	cytosol, nucleus, plastid	44.95	49.33
OQU78268	Sorghum	cytosol, nucleus, plastid	44.8	49.33
KXG33492	Sorghum	cytosol	44.34	49.15
Os01t0775500-01	Rice	cytosol, mitochondrion	25.99	48.71
Os05t0508400-01	Rice	cytoskeleton, cytosol, plastid	44.34	48.01
TraesCS3B01G344800.1	Wheat	plastid	32.26	46.78
TraesCS3D01G310300.1	Wheat	plastid	32.11	46.56
TraesCS1D01G327100.1	Wheat	cytosol	41.74	46.51
HORVU3Hr1G075960.3	Barley	plastid	31.8	46.33
HORVU1Hr1G075520.2	Barley	cytosol	41.44	46.25
TraesCS3A01G321000.1	Wheat	plastid	31.8	46.12
TraesCS1A01G325500.1	Wheat	cytosol	41.28	45.38
TraesCS1B01G338600.1	Wheat	cytosol	41.59	44.88
OQU87644	Sorghum	cytosol	14.68	40.34
PGSC0003DMT400009447	Potato	cytosol, mitochondrion, plastid	15.6	38.64
PGSC0003DMT400009575	Potato	cytosol	18.81	37.5
PGSC0003DMT400006686	Potato	cytosol	10.7	34.83
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	6.73	32.35
Zm00001d012640_P010	Maize	endoplasmic reticulum	29.51	27.07
PGSC0003DMT400044313	Potato	cytosol	9.17	19.8
Os01t0775600-01	Rice	cytosol	0.92	2.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400021541	EnsemblPlantsGene:PGSC0003DMG400008353	EntrezGene:102583489	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf
PFAM:PF01419	PFscan:PS51752	PGSC:PGSC0003DMG400008353	RefSeq:XP_006362248.1	SEG:seg	SMART:SM00915
SUPFAM:SSF51101	UniParc:UPI000295FA40	UniProt:M1AF99	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008353]

Coordinates

chr10:+:59117539..59121391

Molecular Weight (calculated)

71427.9 Da

IEP (calculated)

9.196

GRAVY (calculated)

-0.384

Length

654 amino acids

Sequence
(BLAST)

001: MSFEDHGKHT ISVGPWGGEN GLHWDDGVYS TIRQLEIAHG TGVDSIKVEY DKNGTSVFSE KHGGGVGAKT DKIILSYPDE FLTSMHGYYG SLYERGSVFV
101: RSLTFESNKR TYGPYGVEQG TYFTLPISRG KIVGFHGKSG WYLDAIGVYI EPIHKALPTH SVVPSHQLHS IGHSHQSIVQ GMETYEYSMI QGSLGKNFDL
201: IVAVRHKEDH NKILPPNTLS RQSSSSDHDS SSNEPNKKVA TVAPAPIERV PSKTVKGVVT YCPWGGSGGN VFDDGIYDGV RQVYLSRNVG IVSVRACYDK
301: NGQAIWGSKN GGTGSFKTEK IIFDYPSEIL THITGYYGPT MIMGPNIIHS LTFHTTKGKH GPYGEEQGQQ FSTKLKDGMI VGFHGRKGMF LDALGVHVLE
401: GKVTPCLPPA PALNAVKPNA ASVPSLHSSA PLKSNKHVAQ IVPSLTHSAP LKPAKPKASF VTEADESTQW SFKLGRKGLT DEGVQKIVKD PAPYGPGPWG
501: GEGGKPWDDG VFTGIKQIIL TQTSEAISCI EIEYERNGQS VWSVKHGANV GKFTNKVKLE FPHEVLTCIT GFYGPISKDM GLKVIKSLTF HTTRRKFGPF
601: GEELGTYFTS STTEGKVVGF HGRSGMYLDA IGVHMQHWLG NQRTSKNPLM KMFH

Best Arabidopsis Sequence Match ( AT1G19715.3 )
(BLAST)

001: MVLTSSYSVE GKPASLGPWG GQSGHAWDDG MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT
101: ICVRSLTFES NRRKYGPFGV DSGTFFALPK SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL
201: RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH
301: DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH
401: NNSGTAQIEN SPWANKLVLA ANGHGEEVDR GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT
501: HRIKFEYPDE SITCISGYYG PLNNSDRYNV VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL
601: F

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.