CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 2
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87644	Sorghum	cytosol	35.59	88.24
TraesCS3A01G321000.1	Wheat	plastid	59.15	77.38
TraesCS3B01G344800.1	Wheat	plastid	58.98	77.16
TraesCS3D01G310300.1	Wheat	plastid	58.98	77.16
HORVU3Hr1G075960.3	Barley	plastid	58.64	77.06
Os01t0775500-01	Rice	cytosol, mitochondrion	44.92	75.93
OQU78268	Sorghum	cytosol, nucleus, plastid	64.75	64.31
KRG98276	Soybean	cytosol	51.53	51.61
KRH30293	Soybean	cytosol	50.51	50.59
CDY63700	Canola	cytosol	47.12	47.52
Bra016496.1-P	Field mustard	cytosol	46.95	47.51
Bra025760.1-P	Field mustard	extracellular	48.81	47.45
KRH72685	Soybean	peroxisome	43.22	46.62
AT1G19715.3	Thale cress	cytoskeleton, cytosol, plastid	47.46	46.59
VIT_18s0001g13210.t01	Wine grape	cytosol	52.71	46.42
CDX96652	Canola	extracellular	47.12	45.2
PGSC0003DMT400021541	Potato	cytosol	49.15	44.34
Solyc10g078600.1.1	Tomato	cytosol	48.64	44.09
Zm00001d012640_P010	Maize	endoplasmic reticulum	52.88	43.76
OQU78369	Sorghum	mitochondrion	12.54	35.75
KXG33219	Sorghum	mitochondrion	11.19	31.73
Os01t0775600-01	Rice	cytosol	1.19	3.24

Protein Annotations

EnsemblPlants:KXG33492	EnsemblPlantsGene:SORBI_3003G313900	Gene3D:2.100.10.30	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246
InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419
PFscan:PS51752	ProteinID:KXG33492	ProteinID:KXG33492.1	ProteinID:OQU87643.1	SEG:seg	SMART:SM00915
SUPFAM:SSF51101	UniParc:UPI0002207209	UniProt:A0A1B6Q6E4	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:64222733..64226668

Molecular Weight (calculated)

64311.0 Da

IEP (calculated)

8.489

GRAVY (calculated)

-0.327

Length

590 amino acids

Sequence
(BLAST)

001: MNFKGSSGKN LMTIGPWGGL GGDLWDDGVN SAVCQIIISH GAAIDSIQFE YELRGGLVWS EKHGTSDGGS KTDQVKLNYP EEVLTSISGC YGAVGSSVVI
101: RSLTFESNCS KYGPFGTEQG TSFSLPMFSG KIVGFHGRSG SCLHSIGCHL NKENTTKLSK NAPSALRSIT RSFDRNGHRY ADRSAGYDMV LAVKDRGDNY
201: NVLTSSLPKE QYPNPSKMSK MVSIPSFYSD NGTMTISTPV RFGPWGGNGG TIFDDGIYTG VRQINLTRGL GISSMKVLYD RNGQAIWGDK RGVSGGARPE
301: KVVFDFPSEI LTHITGYFGS TMIMGPTVIK SLTFHTTKKS HGPFGDEHGT FFSSCLTDGR IVGFHGRAGW YIDSIGVHVL EGKVLSQRVD TEFADASPSR
401: QSDMLALARR EIGDEVTYGV VKEPIPIGPG PWGGDGGKPW DDGVYTGVKQ IYIMRSDFIG SVQIEYDRSG QSIWSTKHGN GGQITHRIKL DYPHEVLTCI
501: YGYYNTCVEE GPRVLRSLTF VSSRGKYGPF GDEIGTYFTS ATTKGKVVGF HGRSSLYLDA IGVHMQHWLG DMKTTTSASN SKYYISRYLF

Best Arabidopsis Sequence Match ( AT1G19715.3 )
(BLAST)

001: MVLTSSYSVE GKPASLGPWG GQSGHAWDDG MYTTVKQIII AHGSGIDSIQ IEYDKNGSSV WSEKRGGKGG KKFDKVKFDY PHEYLISVNG TYGSFDVWGT
101: ICVRSLTFES NRRKYGPFGV DSGTFFALPK SGSKIIGFHG KAGWYLDAIG VHTQPIPKEN NPSSKILLHS HQSFSQGDKK HEYSVLQGSV GQNFDIVVTL
201: RKKDPTLPSF ESRDSAGAEV TKHKLVTDTE KSQSKIEGGA KTYGPWGGTG GIMFDDGIYT GIRQINLSRN VGIVSMKVCY DFRGQAVWGS KHGGVGGFKH
301: DKIVFDYPSE VLTHVTGTYG PLMYMGPNVI KSLTFRTNRG KHGPYGEEQG PSFTHQMDEG KVVGFLGREG LFLDSIGVHV MECKISSLKP SSPHNAIVPH
401: NNSGTAQIEN SPWANKLVLA ANGHGEEVDR GVVKEPTPSG PGPWGGDGGQ AWDDGVFSGI KQIFVTRGND AITSIQIEYD RNGQSVWSIK HGGDSNGVAT
501: HRIKFEYPDE SITCISGYYG PLNNSDRYNV VKSLSFYTSR GRYGPYGEET GTFFTSTTTQ GKVLGFHGRS SFHLDAIGVH MQHWLGNNKS YYSRASCFKL
601: F

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [plastid,cytoskeleton,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.