Factsheet for VIT_18s0001g13210.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98276	Soybean	cytosol	54.93	62.48
KRH30293	Soybean	cytosol	54.33	61.8
KRH72685	Soybean	peroxisome	49.7	60.88
AT1G19715.3	Thale cress	cytoskeleton, cytosol, plastid	51.49	57.4
PGSC0003DMT400021541	Potato	cytosol	55.52	56.88
Solyc10g078600.1.1	Tomato	cytosol	54.33	55.91
Bra016496.1-P	Field mustard	cytosol	48.51	55.75
CDY63700	Canola	cytosol	48.51	55.56
Bra025760.1-P	Field mustard	extracellular	50.15	55.35
KXG33492	Sorghum	cytosol	46.42	52.71
Zm00001d038651_P004	Maize	cytosol, nucleus, plastid	46.87	52.68
OQU78268	Sorghum	cytosol, nucleus, plastid	46.57	52.53
CDX96652	Canola	extracellular	48.21	52.52
Os01t0775500-01	Rice	cytosol, mitochondrion	26.87	51.58
Os05t0508400-01	Rice	cytoskeleton, cytosol, plastid	45.82	50.83
TraesCS1D01G327100.1	Wheat	cytosol	43.28	49.4
HORVU1Hr1G075520.2	Barley	cytosol	42.99	49.15
TraesCS1A01G325500.1	Wheat	cytosol	43.13	48.57
TraesCS3D01G310300.1	Wheat	plastid	32.54	48.34
TraesCS3B01G344800.1	Wheat	plastid	32.54	48.34
TraesCS3A01G321000.1	Wheat	plastid	32.39	48.12
TraesCS1B01G338600.1	Wheat	cytosol	43.13	47.69
HORVU3Hr1G075960.3	Barley	plastid	31.79	47.44
OQU87644	Sorghum	cytosol	15.67	44.12
VIT_09s0002g02610.t01	Wine grape	cytosol	11.64	37.14
VIT_09s0002g02620.t01	Wine grape	cytosol	11.04	36.1
Zm00001d012640_P010	Maize	endoplasmic reticulum	30.3	28.47
Os01t0775600-01	Rice	cytosol	0.75	2.31

Protein Annotations

ArrayExpress:VIT_18s0001g13210	EMBL:FN595227	EnsemblPlants:VIT_18s0001g13210.t01	EnsemblPlantsGene:VIT_18s0001g13210	Gene3D:2.100.10.30	GO:GO:0003674
GO:GO:0005488	GO:GO:0030246	InterPro:IPR001229	InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant
InterPro:Jacalin-like_lectin_dom_sf	PFAM:PF01419	PFscan:PS51752	ProteinID:CBI19765	ProteinID:CBI19765.3	SEG:seg
SMART:SM00915	SUPFAM:SSF51101	UniParc:UPI0001BE1BBC	UniProt:E0CPE9	MapMan:35.1	:

Description

No Description!

Coordinates

chr18:-:11268578..11271421

Molecular Weight (calculated)

73416.3 Da

IEP (calculated)

9.179

GRAVY (calculated)

-0.464

Length

670 amino acids

Sequence
(BLAST)

001: MFSRQSYEHS LFCCINSSHI FPLTQRKTDP PHHAFSFDNP ISVGPWGGQD GLRWDDGVYS TVRQLVIAHG VGIDSILIEY DKNGSSVWSE KHGGSGGTRT
101: NRVKLDSPDE FLTSIHGHYG SLLERGPVFV RSLTLESNKR TYGPFGIEQG IYFSLPTTGG KIIGFHGKSG WYLDAIGVHL KPHKPSPFKS SVQTQNYFST
201: GTDRVAYSVV QGGVSRGYDV IVAFRQKDDY NSNGSAYNFP NQTCYSGESS DSEKGKVGGV KKLSYSNVSP QNLSRQTSRS GESSDAETKG KIIGAVERVP
301: SKVRGAVTYG PWGGKGGFVF DDGVSTGVRQ INLSRNIGIV SIKVLYDQNG QAVWGSKNGG TGGFRNDKIV IDYPYEVLTH ITGYYAPTMV MGPNIIKSLT
401: FHTTKTKYGP FGEEQGTPFS SNIKEGVIVG FHGRTGLFID AIGVHMIEGK ARPPTRPPSN KQLNQNQSQI QVLDNAAEVD RPLWYSNKSV PTKGGPFEEV
501: GSGVVKEPAP CGPGPWGGDG GRPWDDGVFS GIKQIYLTRA EAICSIQIEY ARNGQSIWST KHGGDYGTTT HRVKLEYPHE VVSCICGYYG PISINEPWNA
601: IKSLTFYTSR GKYGPFGEEI GTYFTSTRTE GKVVGFHGRS SLYLDAIGVH MQHWLGDQRT LKPNLFKIFY

Best Arabidopsis Sequence Match ( AT1G19715.1 )
(BLAST)

001: MSVEGKPASL GPWGGQSGHA WDDGMYTTVK QIIIAHGSGI DSIQIEYDKN GSSVWSEKRG GKGGKKFDKV KFDYPHEYLI SVNGTYGSFD VWGTICVRSL
101: TFESNRRKYG PFGVDSGTFF ALPKSGSKII GFHGKAGWYL DAIGVHTQPI PKENNPSSKI LLHSHQSFSQ GDKKHEYSVL QGSVGQNFDI VVTLRKKDPT
201: LPSFESRDSA GAEVTKHKLV TDTEKSQSKI EGGAKTYGPW GGTGGIMFDD GIYTGIRQIN LSRNVGIVSM KVCYDFRGQA VWGSKHGGVG GFKHDKIVFD
301: YPSEVLTHVT GTYGPLMYMG PNVIKSLTFR TNRGKHGPYG EEQGPSFTHQ MDEGKVVGFL GREGLFLDSI GVHVMECKIS SLKPSSPHNA IVPHNNSGTA
401: QIENSPWANK LVLAANGHGE EVDRGVVKEP TPSGPGPWGG DGGQAWDDGV FSGIKQIFVT RGNDAITSIQ IEYDRNGQSV WSIKHGGDSN GVATHRIKFE
501: YPDESITCIS GYYGPLNNSD RYNVVKSLSF YTSRGRYGPY GEETGTFFTS TTTQGKVLGF HGRSSFHLDA IGVHMQHWLG NNKSYYSRAS CFKLF

Arabidopsis Description

JAL3Jacalin-related lectin 3 [Source:UniProtKB/Swiss-Prot;Acc:F4HQX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.