Factsheet for VIT_09s0002g02620.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
plastid 2
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g02610.t01	Wine grape	cytosol	61.95	60.48
Bra008068.1-P	Field mustard	cytosol	48.29	56.25
AT1G73040.1	Thale cress	cytosol	47.32	55.11
KRH23344	Soybean	cytosol	46.34	52.49
Solyc03g121300.2.1	Tomato	cytosol	48.29	49.25
PGSC0003DMT400006686	Potato	cytosol	47.8	48.76
GSMUA_Achr1P05130_001	Banana	cytosol	46.34	48.22
Os05t0541800-01	Rice	cytosol, mitochondrion, plastid	20.0	44.09
CDY48032	Canola	cytosol, extracellular, nucleus	48.29	43.04
PGSC0003DMT400006433	Potato	cytosol, nucleus, peroxisome	27.8	41.91
CDX82115	Canola	extracellular	48.78	40.0
OQU78369	Sorghum	mitochondrion	39.02	38.65
KXG33219	Sorghum	mitochondrion	35.12	34.62
Zm00001d009416_P001	Maize	cytosol, mitochondrion	38.54	34.2
TraesCS1D01G368600.1	Wheat	mitochondrion	36.59	34.09
TraesCS1A01G363600.1	Wheat	cytosol	36.1	33.64
TraesCS1B01G380700.1	Wheat	mitochondrion	35.61	33.18
Os04t0330200-01	Rice	mitochondrion	28.29	30.69
Os04t0200400-00	Rice	mitochondrion	27.32	29.63
HORVU1Hr1G079360.2	Barley	extracellular	37.07	29.01
Os01t0706800-00	Rice	mitochondrion	23.41	17.91
VIT_18s0001g13210.t01	Wine grape	cytosol	36.1	11.04

Protein Annotations

EntrezGene:100246263	wikigene:100246263	Gene3D:2.100.10.30	MapMan:35.1	ProteinID:CBI35989	ProteinID:CBI35989.3
UniProt:D7U043	EMBL:FN596494	GO:GO:0003674	GO:GO:0005488	GO:GO:0030246	InterPro:IPR001229
InterPro:IPR036404	InterPro:Jacalin-like_lectin_dom	InterPro:Jacalin-like_lectin_dom_plant	InterPro:Jacalin-like_lectin_dom_sf	EntrezGene:LOC100246263	wikigene:LOC100246263
PFAM:PF01419	PFscan:PS51752	PANTHER:PTHR45172	SMART:SM00915	SUPFAM:SSF51101	TIGR:TC54933
UniParc:UPI00015C8DA3	ArrayExpress:VIT_09s0002g02620	EnsemblPlantsGene:VIT_09s0002g02620	EnsemblPlants:VIT_09s0002g02620.t01	unigene:Vvi.16841	RefSeq:XP_002281330
RefSeq:XP_002281330.1	RefSeq:XP_002281330.2	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr9:-:2387087..2388063

Molecular Weight (calculated)

22237.4 Da

IEP (calculated)

6.852

GRAVY (calculated)

-0.335

Length

205 amino acids

Sequence
(BLAST)

001: MLIETFRPPG DLYQRHSPPH LHAAPHLSNC WINMEGGKDH SHGKKLSMVV GPWGGHGGSS WDDGSYSGVR EITIVYAGCI DSIRVVYDKN GEPVSGDKHG
101: GSGGDQTSEI KLQYPEEKLI GVSGHYHPFG FIGTPVIRSL TLKSNRRTFG PFGVEEGTPF SLTMDGGQIV GFQGRSDLYL DAIGFRLSGT APPTKFPCEM
201: FCSIL

Best Arabidopsis Sequence Match ( AT1G73040.1 )
(BLAST)

001: MDQQQQGDKN LTVFVGPWGG NGGTTWDDGI YDGVREIRLV YDHCIDSISV IYDKNGKPAK SEKHGGVGGN KTSEIKLQYP EEYLTGVSGY YCPMVNSGTP
101: VIRSMTFKSN KQVYGPYGVE QGTPFTFSVN GGRIVGMNGR SGWYLDSIGF HLSRPKSTKM INKLRKKIHW LTRIVA

Arabidopsis Description

JAL19Jacalin-related lectin 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSM3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.