Factsheet for GSMUA_Achr6P01240_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0266700-01	Rice	plasma membrane	52.11	62.69
OQU92866	Sorghum	cytosol	50.21	62.63
TraesCS4B01G211900.1	Wheat	cytosol	48.73	60.63
TraesCS4D01G212700.1	Wheat	cytosol	49.16	60.36
TraesCS4A01G092400.1	Wheat	cytosol	48.95	60.1
VIT_02s0087g00190.t01	Wine grape	cytosol	45.78	58.49
Zm00001d028558_P003	Maize	cytosol	47.05	56.46
Solyc08g074780.2.1	Tomato	cytosol	41.56	54.42
KRH76411	Soybean	cytosol	41.56	54.42
PGSC0003DMT400077295	Potato	cytosol	41.35	54.14
KRH39714	Soybean	cytosol	41.14	53.87
GSMUA_Achr11P...	Banana	cytosol	39.66	50.67
HORVU4Hr1G060770.2	Barley	cytosol	44.09	49.88
GSMUA_Achr5P19940_001	Banana	cytosol	38.61	49.33
GSMUA_Achr8P11720_001	Banana	cytosol	37.55	47.98
GSMUA_Achr9P02620_001	Banana	cytosol	5.27	47.17
GSMUA_Achr11P...	Banana	cytosol	36.29	46.11
AT1G31440.1	Thale cress	cytosol	40.93	44.19
CDY12418	Canola	cytosol	40.3	44.11
CDY27149	Canola	cytosol	39.45	43.19
Bra038424.1-P	Field mustard	cytosol	39.45	43.19
GSMUA_Achr9P02630_001	Banana	mitochondrion	28.27	42.68
GSMUA_Achr6P29510_001	Banana	cytosol	28.27	26.12
CDY12310	Canola	nucleus	8.65	18.39

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:35.1	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G01240_001	EnsemblPlants:GSMUA_Achr6P01240_001	EnsemblPlants:GSMUA_Achr6T01240_001	InterPro:IPR001452
InterPro:IPR027267	UniProt:M0T372	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF1
InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000295DF44
SEG:seg	:	:	:	:	:

Description

src homology-3 domain protein 3, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G01240_001]

Coordinates

chr6:-:814064..825032

Molecular Weight (calculated)

53024.9 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.675

Length

474 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVAKQQQ AVFKQISVRF SHDSSLVDEA ELQCQQKLQM LYASTKAAKH LQRDIVRGVE AFIAISSKQM EIVNKLAEDC CKYGTKYQDF
101: GFPLASGALN FGTSHSMMEK ERANLLTILG DQVYEPIRAM IIGAPLEDAR FLTYRYDRIR QDVEAQTAEV LRRQLKSKEV VETTDVSAKL QHAESKLQEL
201: RTTLSALGRE ATAAMMAVED QQQQNTFNHL LAMVDAERAY YQSVANILDK LHDEMVQMKD NHGSVRQAAT IETIQNDDSK TSQSHYVSVT QAATTEIMQS
301: QTGNEDSNMS PSHQESVTQA ATTETVQRQT GNEDSKRSQS HHVSVTQTAT TETMQSQTGN EDVKTSRYHH ESVTQTATTE MQSQKDDNDS KASRSGDFQV
401: NGQNPMYFVA QVVHSFDAQA DGELSLSVGD YVVVRQVAPN GWSEGECKEK AGWFPSAYVE RRDKAPASKV IKTH

Best Arabidopsis Sequence Match ( AT1G31440.1 )
(BLAST)

001: MEAIRKQAAK LREQVARQQQ AVLKHLGHVN ADAVVVDEEE LHCHQKLQDL YSSTKAAKRL QRNIVRGLEG FIATGTKVVE IGLKFAEDFK KYGDENPDAN
101: TPLSRVAHHF GTSYKSVEGE RETLLGVLSE QVCEPIRTMI YSAPLEDARH LVNHYDRLRQ EVEAQATDVL RRRSKLKESD ISEEAYIKLK NSESRLAELK
201: SSMKTLGKEA TKAMLEVDDQ QQNVTSQRLR ALVEAERSYH RNALDILDKL HSEMIAEEEA IGSSPKSLPL HIEDSASLPQ QEPNSNSSGE IKSNPLGKIK
301: ASRREEIKSN PQEVTKPSPK DEMKSSPQEE TKSNHQKEIK SSPQEEIKKS NGSDDHHNHQ LLSQNDSYFL AKVVHPFDAQ APGELSLAVD DYVIVRQVAG
401: TGWSEGEYKG KAGWFPSAYV EKQEKAPASK IVESNSKQQ

Arabidopsis Description

SH3P1SH3 domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C865]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.