Factsheet for PGSC0003DMT400077295

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g074780.2.1	Tomato	cytosol	96.13	96.13
VIT_02s0087g00190.t01	Wine grape	cytosol	59.39	57.95
KRH76411	Soybean	cytosol	56.91	56.91
KRH39714	Soybean	cytosol	55.8	55.8
OQU92866	Sorghum	cytosol	53.31	50.79
TraesCS4B01G211900.1	Wheat	cytosol	53.04	50.39
TraesCS4D01G212700.1	Wheat	cytosol	53.59	50.26
TraesCS4A01G092400.1	Wheat	cytosol	53.59	50.26
PGSC0003DMT400008049	Potato	mitochondrion	49.17	48.11
Os03t0266700-01	Rice	plasma membrane	51.93	47.72
CDY12418	Canola	cytosol	56.08	46.88
PGSC0003DMT400035686	Potato	cytosol	47.79	46.76
Bra038424.1-P	Field mustard	cytosol	55.8	46.65
CDY27149	Canola	cytosol	55.8	46.65
AT1G31440.1	Thale cress	cytosol	54.97	45.33
Zm00001d028558_P003	Maize	cytosol	47.79	43.8
PGSC0003DMT400007954	Potato	cytosol	41.99	43.06
HORVU4Hr1G060770.2	Barley	cytosol	48.62	42.0
GSMUA_Achr6P01240_001	Banana	cytosol	54.14	41.35
CDY12310	Canola	nucleus	15.19	24.66

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:102605617	Gene3D:2.30.30.40	MapMan:35.1	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	UniProt:M1CY64
PFAM:PF14604	EnsemblPlantsGene:PGSC0003DMG400030067	PGSC:PGSC0003DMG400030067	EnsemblPlants:PGSC0003DMT400077295	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI000296EAE6	RefSeq:XP_006365386.1	RefSeq:XP_006365387.1	SEG:seg	:	:

Description

Clathrin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030067]

Coordinates

chr8:-:46003316..46011749

Molecular Weight (calculated)

40452.6 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.558

Length

362 amino acids

Sequence
(BLAST)

001: MEAIKKQATK LREQVAKQQQ AILRQLGHLG HESVMVDEAE LEIHQRLQEL YMSTRAAKHF QRDIVRGVEG YISTSKKQVE IARKLVDNCY KYGSEIQNGP
101: STLPKVAVEF GTSHAAMEDQ REIMLGVLGS QVCEPLRASI HGAPLEDARH LTHSYDRMRQ EFESQATEVI RRQSKFREAS TESLAKLKNA ETRLSELKSS
201: VLVLGKEATD AMLSVEEEQQ QISFQKLLTM VDAERSYHQN VVSILEKLHS EMLVEEQLSE SSPQSSNSPK VLHDTTSNGT EHPEAEDKSP TYFIAKVMHS
301: FDAQADGELS LEVGDYVVVR QVAPNGWSEG ECNGTSGWFP SAYAVKSDEV AASKMVETDT TP

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.