Factsheet for VIT_02s0087g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0169g00080.t01	Wine grape	cytosol	25.34	69.63
KRH76411	Soybean	cytosol	65.5	67.13
KRH39714	Soybean	cytosol	63.61	65.19
PGSC0003DMT400077295	Potato	cytosol	57.95	59.39
Solyc08g074780.2.1	Tomato	cytosol	57.68	59.12
TraesCS4B01G211900.1	Wheat	cytosol	56.87	55.38
Os03t0266700-01	Rice	plasma membrane	58.76	55.33
OQU92866	Sorghum	cytosol	56.33	55.0
TraesCS4D01G212700.1	Wheat	cytosol	56.6	54.4
TraesCS4A01G092400.1	Wheat	cytosol	56.33	54.15
VIT_03s0038g00460.t01	Wine grape	cytosol	50.13	50.13
Zm00001d028558_P003	Maize	cytosol	52.02	48.86
AT1G31440.1	Thale cress	cytosol	57.68	48.75
CDY12418	Canola	cytosol	56.87	48.73
CDY27149	Canola	cytosol	56.06	48.04
Bra038424.1-P	Field mustard	cytosol	56.06	48.04
VIT_10s0003g02590.t01	Wine grape	cytosol	44.74	47.7
VIT_18s0001g13530.t01	Wine grape	cytosol	46.36	46.74
GSMUA_Achr6P01240_001	Banana	cytosol	58.49	45.78
HORVU4Hr1G060770.2	Barley	cytosol	50.94	45.11
CDY12310	Canola	nucleus	14.02	23.32

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100249391	wikigene:100249391	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf
ProteinID:CBI29233	ProteinID:CBI29233.3	ncoils:Coil	UniProt:D7TFG0	EMBL:FN595769	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	EntrezGene:LOC100249391	wikigene:LOC100249391
PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI00015CD446	ArrayExpress:VIT_02s0087g00190	EnsemblPlantsGene:VIT_02s0087g00190
EnsemblPlants:VIT_02s0087g00190.t01	unigene:Vvi.713	RefSeq:XP_002267588	RefSeq:XP_002267588.1	RefSeq:XP_003631526	RefSeq:XP_003631526.1

Description

No Description!

Coordinates

chr2:-:17393646..17407169

Molecular Weight (calculated)

41451.0 Da

IEP (calculated)

6.258

GRAVY (calculated)

-0.538

Length

371 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVLKQLGHFG IETVVVDEAE QRQLQNLYNS TRTAKHFQKD IVRGIEGFVS TSSKQMEIVR RMAEDCCKYG TENQSTGSPL
101: ARAALYFGNS HSSMEKERET LLGVFCDQVS EPLRVLITGA PLEDARHLTH RYERLRQEVE SQAADVLRRQ AKFRDPATSA ESSIKLQSAE AKLSELKSAM
201: MALGREATAA MLSVEAQQQR ITFQRLLTMV EAERSYHQTV LATLEKLYDE MIMEKKQNES SSQPITMEKD VCVPTTSKDA NSNGFDNHGH ANQNGSYFIA
301: KVIHPFDAQA DGELGLSVDD YVVVRQVAPN GWSEGECKGT AGWFPSAYVE RRDKAPASVI NEEASLAMIP N

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.