Factsheet for VIT_18s0001g13530.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024355_P001	Maize	cytosol	11.96	84.62
VIT_03s0038g00460.t01	Wine grape	cytosol	82.07	81.4
GSMUA_Achr11P...	Banana	cytosol	77.17	76.55
GSMUA_Achr5P19940_001	Banana	cytosol	77.17	76.55
EER91379	Sorghum	cytosol	73.91	73.71
GSMUA_Achr8P11720_001	Banana	cytosol	73.64	73.05
TraesCS1A01G177700.1	Wheat	cytosol	72.83	72.63
Solyc07g032110.2.1	Tomato	cytosol	72.83	72.43
TraesCS1B01G202500.1	Wheat	cytosol	72.55	72.36
PGSC0003DMT400035686	Potato	cytosol	72.55	72.16
GSMUA_Achr11P...	Banana	cytosol	73.1	72.12
TraesCS1D01G176200.1	Wheat	cytosol	72.28	72.09
Zm00001d013860_P012	Maize	cytosol	73.37	72.0
Os10t0512700-01	Rice	plasma membrane	72.28	71.89
OQU82036	Sorghum	cytosol	69.84	69.84
TraesCS2B01G406500.2	Wheat	cytosol	69.29	68.92
Zm00001d002810_P001	Maize	plasma membrane	68.75	68.75
TraesCS2A01G388400.1	Wheat	cytosol	69.02	68.65
TraesCS2D01G386200.1	Wheat	cytosol	69.02	68.65
Zm00001d032465_P002	Maize	cytosol	72.83	68.54
Os04t0539800-01	Rice	plasma membrane	67.66	67.48
HORVU1Hr1G047180.11	Barley	cytosol	67.39	66.67
Zm00001d025955_P001	Maize	cytosol, mitochondrion	67.12	65.17
HORVU2Hr1G092430.1	Barley	cytosol	68.48	60.87
VIT_10s0003g02590.t01	Wine grape	cytosol	51.09	54.02
VIT_02s0087g00190.t01	Wine grape	cytosol	46.74	46.36
VIT_00s0169g00080.t01	Wine grape	cytosol	11.41	31.11

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100264255	wikigene:100264255	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf
ProteinID:CBI19795	ProteinID:CBI19795.3	ncoils:Coil	UniProt:E0CPH9	EMBL:FN595227	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	EntrezGene:LOC100264255	wikigene:LOC100264255
PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI00015C790F	ArrayExpress:VIT_18s0001g13530	EnsemblPlantsGene:VIT_18s0001g13530
EnsemblPlants:VIT_18s0001g13530.t01	unigene:Vvi.20789	RefSeq:XP_002279562	RefSeq:XP_002279562.1	RefSeq:XP_003634375	RefSeq:XP_003634375.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11552151..11558455

Molecular Weight (calculated)

40701.6 Da

IEP (calculated)

7.693

GRAVY (calculated)

-0.481

Length

368 amino acids

Sequence
(BLAST)

001: MEAIRKQATK IIDQVAKQQQ AVLKQFSGGG YGGPDNVLTD ESELQQHQKL EKLYISTRAG KHFQRDIVRG VEGFIVTGSK QVEIGTKLSE DSRKYGVENT
101: CTSGSTLSKA ALSFARARAQ MEKERGNLLK ALGTKVGEPL RAMVMGAPLE DARHLAQRYE RMRMEAEAQA IEVSKRQIKA RESMGNPDNV LKLEAAEAKL
201: HELKSNTAIL GKEAVSAMAA VEGQQQRLTL QRIIAMVESE RSYHQSVLQI LDQLESEMLA ERQRIEAFPS PTANNAMPPP PSYDEVNNVF ASQTYGESTG
301: SMGYFLGEVM HSFQAESDVE LNLSVGDHVV IRKVSNSGWA EGECRGKAGW FPVGYIERRE RVLASKLV

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.