Factsheet for Os10t0512700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0681400-01
Os03t0248000-02
Os03t0258500-01
Os03t0644000-01
Os04t0539800-01
Os05t0559350-00
Os10t0163100-01
Os10t0512700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	Os03t0248000-02	AT2G31260.1	24249832
AT4G34660.1	Os10t0163100-01	AT2G31260.1	24249832
AT4G34660.1	Os01t0681400-01	AT3G61710.1	24249832
AT4G34660.1	Os03t0258500-01	AT3G61710.1	24249832
AT4G34660.1	Os03t0644000-01	AT3G61710.1	24249832
AT4G34660.1	Os04t0539800-01	AT4G34660.1	24249832
AT4G34660.1	Os10t0512700-01	AT4G34660.1	24249832
AT4G34660.1	Os05t0559350-00	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91379	Sorghum	cytosol	93.24	93.5
TraesCS1B01G202500.1	Wheat	cytosol	92.7	92.95
TraesCS1D01G176200.1	Wheat	cytosol	92.43	92.68
TraesCS1A01G177700.1	Wheat	cytosol	92.43	92.68
Zm00001d024355_P001	Maize	cytosol	12.97	92.31
Zm00001d013860_P012	Maize	cytosol	92.43	91.2
Zm00001d032465_P002	Maize	cytosol	91.35	86.44
HORVU1Hr1G047180.11	Barley	cytosol	85.95	85.48
GSMUA_Achr5P19940_001	Banana	cytosol	80.0	79.78
GSMUA_Achr11P...	Banana	cytosol	78.65	78.44
Solyc01g110300.2.1	Tomato	nucleus	75.95	76.36
KRH51472	Soybean	cytosol	76.49	76.28
GSMUA_Achr8P11720_001	Banana	cytosol	76.49	76.28
PGSC0003DMT400008049	Potato	mitochondrion	75.95	75.95
VIT_03s0038g00460.t01	Wine grape	cytosol	75.14	74.93
KRH29359	Soybean	endoplasmic reticulum	73.78	73.58
VIT_18s0001g13530.t01	Wine grape	cytosol	71.89	72.28
KRH24385	Soybean	endoplasmic reticulum	72.16	71.97
Os04t0539800-01	Rice	plasma membrane	70.54	70.73
AT4G34660.1	Thale cress	mitochondrion	69.46	69.84
Bra011550.1-P	Field mustard	mitochondrion	68.92	69.11
CDX75452	Canola	mitochondrion	68.92	69.11
CDX69077	Canola	mitochondrion	68.65	68.83
KRH60785	Soybean	endoplasmic reticulum	71.89	68.56
PGSC0003DMT400035686	Potato	cytosol	68.11	68.11
Solyc07g032110.2.1	Tomato	cytosol	68.11	68.11
CDY17473	Canola	mitochondrion	67.57	67.93
CDX76295	Canola	cytosol	67.03	67.57
Bra034642.1-P	Field mustard	cytosol	63.24	66.48
Bra010715.1-P	Field mustard	cytosol	65.95	65.42
CDY12114	Canola	cytosol	20.0	62.18
CDX90304	Canola	cytosol	65.68	57.58
CDY12115	Canola	cytosol	65.41	57.21
Os07t0508300-01	Rice	plasma membrane	44.86	47.7
Os03t0266700-01	Rice	plasma membrane	47.57	44.67

Protein Annotations

Gene3D:1.20.1270.60	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	EntrezGene:4349099	ProteinID:ABB47881.1	InterPro:AH/BAR_dom_sf
ProteinID:BAF26959.1	ProteinID:BAT11635.1	ncoils:Coil	ProteinID:EEE51263.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001452	InterPro:IPR027267	EnsemblPlantsGene:Os10g0512700	EnsemblPlants:Os10t0512700-01	PFAM:PF14604
PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4	UniProt:Q337C1	InterPro:SH3-like_dom_sf	InterPro:SH3_domain
SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI00005E1F57	RefSeq:XP_015612895.1	SEG:seg

Description

Similar to SH3 domain-containing protein 3. (Os10t0512700-01)

Coordinates

chr10:-:19751630..19755139

Molecular Weight (calculated)

41245.3 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.512

Length

370 amino acids

Sequence
(BLAST)

001: MEAIRKQASK LREQVARQQQ AVMKQFGGGY GADGAFADEA EAQQHSKLEK LYISTRAAKH FQRDIVRGVE GYIVTGSKQV EIGNKLCEDG KKYGAENTCT
101: SGSTLSKAAL CFAKARSLME KERGNLLKAL GTQVAEPLRA MVMGAPLEDA RHLAQRYDRM RQEAEAQAIE VSKRQMKLRE TSGNGDMISR LEAAESKLQE
201: LKSNMGVLGK EAVASMTAVE AQQQRLTLQR LIAMVESERS YHQRVLQILD QLEREMVSER QRIEGAPPPA VESSMPPPPS YEEINGVFMR NPTVAELVET
301: VEFFLAEAIQ SYRAESETEL NLAAGDYIVV RKVSNNGWAE GECRGKAGWF PYDYIEKRDR VLASKVAQVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.