Factsheet for PGSC0003DMT400008049

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400008049
PGSC0003DMT400012239
PGSC0003DMT400032488
PGSC0003DMT400046335
PGSC0003DMT400047758
PGSC0003DMT400080577

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	PGSC0003DMT400080577	AT2G31260.1	24249832
AT4G34660.1	PGSC0003DMT400012239	AT2G45170.1	24249832
AT4G34660.1	PGSC0003DMT400032488	AT2G45170.1	24249832
AT4G34660.1	PGSC0003DMT400046335	AT3G61710.1	24249832
AT4G34660.1	PGSC0003DMT400008049	AT4G34660.1	24249832
AT4G34660.1	PGSC0003DMT400047758	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g110300.2.1	Tomato	nucleus	99.19	99.73
Zm00001d024355_P001	Maize	cytosol	12.97	92.31
KRH51472	Soybean	cytosol	83.51	83.29
VIT_03s0038g00460.t01	Wine grape	cytosol	80.27	80.05
KRH29359	Soybean	endoplasmic reticulum	79.19	78.98
KRH24385	Soybean	endoplasmic reticulum	78.92	78.71
AT4G34660.1	Thale cress	mitochondrion	76.22	76.63
GSMUA_Achr11P...	Banana	cytosol	76.49	76.28
GSMUA_Achr5P19940_001	Banana	cytosol	76.22	76.01
Os10t0512700-01	Rice	plasma membrane	75.95	75.95
Bra011550.1-P	Field mustard	mitochondrion	75.68	75.88
CDX75452	Canola	mitochondrion	75.68	75.88
CDX69077	Canola	mitochondrion	75.41	75.61
EER91379	Sorghum	cytosol	74.86	75.07
TraesCS1B01G202500.1	Wheat	cytosol	74.59	74.8
KRH60785	Soybean	endoplasmic reticulum	78.38	74.74
TraesCS1A01G177700.1	Wheat	cytosol	74.32	74.53
TraesCS1D01G176200.1	Wheat	cytosol	74.32	74.53
PGSC0003DMT400035686	Potato	cytosol	73.78	73.78
GSMUA_Achr8P11720_001	Banana	cytosol	73.78	73.58
GSMUA_Achr11P...	Banana	cytosol	74.05	73.46
CDY17473	Canola	mitochondrion	72.97	73.37
Zm00001d013860_P012	Maize	cytosol	74.32	73.33
CDX76295	Canola	cytosol	72.43	73.02
Bra034642.1-P	Field mustard	cytosol	68.92	72.44
Zm00001d032465_P002	Maize	cytosol	75.68	71.61
Bra010715.1-P	Field mustard	cytosol	70.81	70.24
OQU82036	Sorghum	cytosol	69.19	69.57
Zm00001d002810_P001	Maize	plasma membrane	68.38	68.75
TraesCS2B01G406500.2	Wheat	cytosol	68.65	68.65
TraesCS2A01G388400.1	Wheat	cytosol	68.38	68.38
TraesCS2D01G386200.1	Wheat	cytosol	68.38	68.38
Os04t0539800-01	Rice	plasma membrane	67.84	68.02
HORVU1Hr1G047180.11	Barley	cytosol	68.38	68.01
Zm00001d025955_P001	Maize	cytosol, mitochondrion	66.76	65.17
CDY12115	Canola	cytosol	71.35	62.41
CDX90304	Canola	cytosol	70.54	61.85
CDY12114	Canola	cytosol	19.73	61.34
HORVU2Hr1G092430.1	Barley	cytosol	68.38	61.11
PGSC0003DMT400007954	Potato	cytosol	51.35	53.82
PGSC0003DMT400077295	Potato	cytosol	48.11	49.17

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:102580820	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	InterPro:AH/BAR_dom_sf	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810
GO:GO:0007049	GO:GO:0008150	GO:GO:0009504	GO:GO:0009920	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0072583	InterPro:IPR001452	InterPro:IPR027267	UniProt:M0ZTZ3	PFAM:PF14604
EnsemblPlantsGene:PGSC0003DMG400003111	PGSC:PGSC0003DMG400003111	EnsemblPlants:PGSC0003DMT400008049	PFscan:PS50002	PANTHER:PTHR44109	PANTHER:PTHR44109:SF4
InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044	UniParc:UPI000294876E
RefSeq:XP_006362005.1	SEG:seg	:	:	:	:

Description

Clathrin binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003111]

Coordinates

chr1:-:86608965..86615561

Molecular Weight (calculated)

41195.9 Da

IEP (calculated)

6.809

GRAVY (calculated)

-0.576

Length

370 amino acids

Sequence
(BLAST)

001: MEAIRKQATR LREQVARQQQ AVLKQFGAGG YGSDLVTDEA EMQQHHKLER LYISTRAAKH FQRDIVRGVE GYIVTGSKQV EIGTKLSEDS RKYGAENTCT
101: SGTTLSKAAL GFSRARAQME KERGNLLKAL GTQVAEPLRA MVMGAPLEDA RHLAQRYDRM RQEAEAQAVE VSRRQAKLRE GTGHPDMAYK LEAAETKLDD
201: LKSNTNTLGK EAAAAMAAVE AQQQRLTLQR LIAMVESERS YHQRILQILD QLEAEMLSER QRIEAAPAPA PPVDTMPPPP SYEEVNGVST SPVQNGSTDN
301: MGYFLGEVMY PYQAESDVEL NLSVGEYIVI RKVSNNGWAE GECKGRAGWF PFGYIERRDR VLASKVAEVF

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.