Factsheet for VIT_03s0038g00460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0154g00390.t01
VIT_03s0038g00460.t01
VIT_04s0008g03630.t01
VIT_07s0005g03100.t01
VIT_15s0046g00950.t01
VIT_15s0048g00660.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G34660.1	VIT_07s0005g03100.t01	AT2G31260.1	24249832
AT4G34660.1	VIT_02s0154g00390.t01	AT2G45170.1	24249832
AT4G34660.1	VIT_15s0048g00660.t01	AT2G45170.1	24249832
AT4G34660.1	VIT_15s0046g00950.t01	AT3G61710.1	24249832
AT4G34660.1	VIT_03s0038g00460.t01	AT4G34660.1	24249832
AT4G34660.1	VIT_04s0008g03630.t01	AT5G11550.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024355_P001	Maize	cytosol	12.4	88.46
KRH51472	Soybean	cytosol	84.91	84.91
VIT_18s0001g13530.t01	Wine grape	cytosol	81.4	82.07
KRH29359	Soybean	endoplasmic reticulum	81.67	81.67
KRH24385	Soybean	endoplasmic reticulum	80.86	80.86
Solyc01g110300.2.1	Tomato	nucleus	79.78	80.43
PGSC0003DMT400008049	Potato	mitochondrion	80.05	80.27
GSMUA_Achr5P19940_001	Banana	cytosol	80.05	80.05
GSMUA_Achr11P...	Banana	cytosol	79.51	79.51
AT4G34660.1	Thale cress	mitochondrion	76.28	76.9
KRH60785	Soybean	endoplasmic reticulum	80.32	76.8
GSMUA_Achr8P11720_001	Banana	cytosol	76.55	76.55
EER91379	Sorghum	cytosol	76.01	76.42
Zm00001d013860_P012	Maize	cytosol	76.28	75.47
TraesCS1A01G177700.1	Wheat	cytosol	74.93	75.34
GSMUA_Achr11P...	Banana	cytosol	75.74	75.34
Os10t0512700-01	Rice	plasma membrane	74.93	75.14
TraesCS1B01G202500.1	Wheat	cytosol	74.66	75.07
CDX75452	Canola	mitochondrion	74.39	74.8
TraesCS1D01G176200.1	Wheat	cytosol	74.39	74.8
Bra011550.1-P	Field mustard	mitochondrion	74.39	74.8
CDX69077	Canola	mitochondrion	74.12	74.53
CDY17473	Canola	mitochondrion	73.85	74.46
CDX76295	Canola	cytosol	73.32	74.11
Bra034642.1-P	Field mustard	cytosol	70.08	73.86
Bra010715.1-P	Field mustard	cytosol	73.85	73.46
Zm00001d032465_P002	Maize	cytosol	76.01	72.12
OQU82036	Sorghum	cytosol	71.16	71.74
TraesCS2B01G406500.2	Wheat	cytosol	71.16	71.35
Zm00001d002810_P001	Maize	plasma membrane	70.62	71.2
TraesCS2A01G388400.1	Wheat	cytosol	70.89	71.08
TraesCS2D01G386200.1	Wheat	cytosol	70.89	71.08
Os04t0539800-01	Rice	plasma membrane	70.08	70.46
HORVU1Hr1G047180.11	Barley	cytosol	68.46	68.28
Zm00001d025955_P001	Maize	cytosol, mitochondrion	67.66	66.23
CDX90304	Canola	cytosol	73.58	64.69
CDY12115	Canola	cytosol	72.78	63.83
HORVU2Hr1G092430.1	Barley	cytosol	70.35	63.04
CDY12114	Canola	cytosol	19.95	62.18
VIT_10s0003g02590.t01	Wine grape	cytosol	57.14	60.92
VIT_02s0087g00190.t01	Wine grape	cytosol	50.13	50.13
VIT_00s0169g00080.t01	Wine grape	cytosol	11.86	32.59

Protein Annotations

Gene3D:1.20.1270.60	EntrezGene:100260580	wikigene:100260580	Gene3D:2.30.30.40	MapMan:22.5.4.1.4	UniProt:A5C8Q8
InterPro:AH/BAR_dom_sf	EMBL:AM486171	ProteinID:CAN81938	ProteinID:CAN81938.1	ProteinID:CBI38007	ProteinID:CBI38007.3
ncoils:Coil	EMBL:FN596508	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001452
InterPro:IPR027267	EntrezGene:LOC100260580	wikigene:LOC100260580	PFAM:PF14604	PFscan:PS50002	PANTHER:PTHR44109
PANTHER:PTHR44109:SF4	InterPro:SH3-like_dom_sf	InterPro:SH3_domain	SMART:SM00326	SUPFAM:SSF103657	SUPFAM:SSF50044
UniParc:UPI0001524EF1	ArrayExpress:VIT_03s0038g00460	EnsemblPlantsGene:VIT_03s0038g00460	EnsemblPlants:VIT_03s0038g00460.t01	unigene:Vvi.4852	RefSeq:XP_002266234
RefSeq:XP_002266234.1	RefSeq:XP_003631585	RefSeq:XP_003631585.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:-:430384..436539

Molecular Weight (calculated)

41143.9 Da

IEP (calculated)

7.200

GRAVY (calculated)

-0.546

Length

371 amino acids

Sequence
(BLAST)

001: MEAIRKQASK FREQVAKQQQ AVLKQFGGGG YGGSDNVITD EAELQQHQKL EKLYISTRAG KHFQRDIVRG VEGFIVTGSK QVEIGTKLSE DCRKYGVENT
101: CTSGNTLSKA ALNYGRARAQ IEKERGNLLK ALGTQVAEPL RAMVMGAPLE DARHLAQRYE RMRQEAEAQA IEVSKRQAKM REATGNADNT LKLEAAEAKL
201: HDLKSNMAIL GKEAAAAMAA VEAQQQRLTL QRLIATVESE RAYHQRVLQI LELLETEMIS ERQRIEAPPS PPVENNTPPP PSYEEVNGVF ASQTHNGSSD
301: SISYFLGEVM HSYQAESDVE LNLSIGDFVV VRKVSNNGWA EGECKGKAGW FPFGYVEKRE RVLASKMAEV F

Best Arabidopsis Sequence Match ( AT4G34660.1 )
(BLAST)

001: MDAIRKQASR LREQVARQQQ AVFKQFGGGG YGSGLADEAE LNQHQKLEKL YISTRAAKHY QRDIVRGVEG YIVTGSKQVE IGTKLSEDSR KYGSENTCTN
101: GNVLTRAALN YGRARAQMEK ERGNMLKALG TQVAEPLRAM VLGAPLEDAR HLAQRYDRMR QEAEAQATEV ARRQAKARES QGNPDILMKL ESAEAKLHDL
201: KSNMTILGKE AASALASVED QQQKLTLERL LSMVESERAY HQRVLQILDQ LEGEMVSERQ RIEAPSTPSS ADSMPPPPSY EEANGVFASQ MHDTSTDSMG
301: YFLGEVLFPY HGVTDVELSL STGEYVVVRK VTGSGWAEGE CKGKAGWFPY GYIERRERVL ASKVSEVF

Arabidopsis Description

SH3P2SH3 domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VWF1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.