Factsheet for VIT_15s0046g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30023	Soybean	cytosol	81.23	83.3
KRH62897	Soybean	cytosol	81.23	83.3
Solyc05g050390.2.1	Tomato	cytosol	79.5	79.35
PGSC0003DMT400046335	Potato	cytosol	79.31	79.31
AT3G61710.1	Thale cress	cytosol	73.95	74.66
CDX67858	Canola	nucleus	73.37	73.51
CDY25058	Canola	nucleus	72.99	72.71
GSMUA_Achr7P24520_001	Banana	cytosol	72.22	72.36
CDY70494	Canola	cytosol, golgi, plastid	70.31	69.51
CDY25070	Canola	plastid	49.43	67.36
TraesCS3A01G266600.1	Wheat	golgi	63.03	65.41
EES01994	Sorghum	cytosol	62.45	65.2
TraesCS3D01G266800.1	Wheat	nucleus	62.64	64.88
Os01t0681400-01	Rice	cytosol	61.69	64.4
Zm00001d042303_P001	Maize	cytosol	61.49	64.33
TraesCS3B01G300100.2	Wheat	golgi	62.64	63.5
Os03t0644000-01	Rice	cytosol	60.54	63.07
GSMUA_Achr7P24530_001	Banana	cytosol	63.6	59.82
Os03t0258500-01	Rice	cytosol	58.81	56.54
VIT_15s0046g00960.t01	Wine grape	cytosol	9.0	53.41
KXG33125	Sorghum	cytosol	45.59	53.01
Zm00001d011984_P001	Maize	mitochondrion, plastid	58.62	52.85
HORVU3Hr1G062970.2	Barley	plastid	45.21	44.53
Bra003466.1-P	Field mustard	nucleus	61.88	43.18

Protein Annotations

Gene3D:1.10.418.40	EntrezGene:100232897	wikigene:100232897	MapMan:22.5.1.2	EMBL:AM075835	EntrezGene:ATG6
wikigene:ATG6	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	ProteinID:CAJ27525	ProteinID:CAJ27525.1	ProteinID:CBI40511
ProteinID:CBI40511.3	ncoils:Coil	UniProt:D7UCP6	EMBL:FN596755	GO:GO:0000003	GO:GO:0000045
GO:GO:0000407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006623
GO:GO:0006810	GO:GO:0006914	GO:GO:0006950	GO:GO:0006995	GO:GO:0007154	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607	GO:GO:0009846	GO:GO:0009856
GO:GO:0009987	GO:GO:0009991	GO:GO:0016020	GO:GO:0016043	GO:GO:0031410	GO:GO:0034271
GO:GO:0034272	GO:GO:0044804	GO:GO:0045324	GO:GO:0050832	InterPro:IPR038274	PFAM:PF04111
PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	TIGR:TC64576	UniParc:UPI00015CA3BC	ArrayExpress:VIT_15s0046g00950	EnsemblPlantsGene:VIT_15s0046g00950
EnsemblPlants:VIT_15s0046g00950.t01	unigene:Vvi.12718	RefSeq:XP_002277370	RefSeq:XP_002277370.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:17993529..17999551

Molecular Weight (calculated)

59301.1 Da

IEP (calculated)

5.826

GRAVY (calculated)

-0.530

Length

522 amino acids

Sequence
(BLAST)

001: MMEDSANKSR TFPVDPTLPR WVCQNCRHNL CIVGVDSYAD KFYSDSSRSG MQGSLIHGAG SVLGSTHMDH SFVVLPKQRN QAQGVPPRPR GGAVQPDVSQ
101: SGKAMEESFV MLPPAPASVY KCESAAEGSG THLPSPEGGP SGHLQPNNSG FHTTITVLKR AFDIATTQIQ VEQPLCLECM RVLSDKLDKE VEDVNRDIQA
201: YEACLQRLEG EARDVLSEAD FLKEKLKIEE EERKLEAAIE ETEKQCAQVN AEMKELELKS SRFKELEERY WHEFNNFQFQ LTSHQEERDA ILAKIEVSQA
301: HLELLKRTNV LNDAFPIWHD GEFGTINNFR LGRLPKIPVE WDEINAAWGQ ACLLLHTMVQ YFRPKFQYRI KIIPMGSYPR ITDSNNSTYE LFGPVNLFWS
401: TRYDKAMTLF LTCLKDFADF ANSKDQENNI PPEKCFKLPY KIENDKVENY SITQSFNKQE NWTKALKYTL CNLKWALYWF VGNTNFQPLS AMVSSPEVSA
501: VGSLYTKRIA DSKSEARNSS SP

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.