Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25888209
|
gfp PMID:
25888209
doi
Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. 327156983@qq.com., Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. 415017319@qq.com., Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. 564829796@qq.com., Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. heyanghey@163.com., Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. skywhz@mail.tjnu.edu.cn., Tianjin Key Laboratory of Animal and Plant Resistance, School of Life Sciences, Tianjin Normal University, Tianjin, 300387, China. skyyjy@mail.tjnu.edu.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G266800.1 | Wheat | nucleus | 94.95 | 97.02 |
| TraesCS3A01G266600.1 | Wheat | golgi | 94.76 | 97.02 |
| Zm00001d042303_P001 | Maize | cytosol | 83.11 | 85.77 |
| EES01994 | Sorghum | cytosol | 83.11 | 85.6 |
| Os03t0644000-01 | Rice | cytosol | 82.91 | 85.23 |
| Os01t0681400-01 | Rice | cytosol | 81.75 | 84.2 |
| Os03t0258500-01 | Rice | cytosol | 77.48 | 73.48 |
| Zm00001d011984_P001 | Maize | mitochondrion, plastid | 78.83 | 70.12 |
| KXG33125 | Sorghum | cytosol | 59.22 | 67.93 |
| HORVU3Hr1G062970.2 | Barley | plastid | 69.13 | 67.17 |
| PGSC0003DMT400046335 | Potato | cytosol | 65.05 | 64.18 |
| Solyc05g050390.2.1 | Tomato | cytosol | 64.08 | 63.1 |
| VIT_15s0046g00950.t01 | Wine grape | nucleus | 63.5 | 62.64 |
| GSMUA_Achr7P24520_001 | Banana | cytosol | 63.3 | 62.57 |
| KRH30023 | Soybean | cytosol | 59.61 | 60.31 |
| KRH62897 | Soybean | cytosol | 59.03 | 59.73 |
| AT3G61710.1 | Thale cress | cytosol | 56.12 | 55.9 |
| CDY25070 | Canola | plastid | 41.16 | 55.35 |
| CDX67858 | Canola | nucleus | 55.92 | 55.28 |
| CDY25058 | Canola | nucleus | 55.34 | 54.39 |
| CDY70494 | Canola | cytosol, golgi, plastid | 54.17 | 52.84 |
| GSMUA_Achr7P24530_001 | Banana | cytosol | 55.92 | 51.89 |
| Bra003466.1-P | Field mustard | nucleus | 48.54 | 33.42 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G300100.2 | EnsemblPlantsGene:TraesCS3B01G300100 | Gene3D:1.10.418.40 | GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | InterPro:Atg6/Beclin | InterPro:Atg6/Beclin_C_sf | InterPro:IPR038274 | ncoils:Coil |
| PANTHER:PTHR12768 | PANTHER:PTHR12768:SF4 | PFAM:PF04111 | SEG:seg | MapMan:22.5.1.2 | : |
Description
No Description!
Coordinates
chr3B:+:481623289..481630762
Molecular Weight (calculated)
58150.0 Da
IEP (calculated)
6.575
GRAVY (calculated)
-0.458
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPKAAAGEK GRGVDPSLPR FKCQECHRAL LVVGVESFPD RLPAHANSGM HASSVQGSIM GASRMDSSYV VLSKQNRSQG PGIPPRPPNA AARHVEPNQS
101: TRAIEGSYIM LPPAAASIYK TSTSEGGGAH LSPPNLNSTS PSPGNNTGFH SSVTVLKRAF EIASSQTQVE QPLCLECMRV LSDKMDKEIE DVNTDIKAYD
201: ACLQRLEQES YNVLSETDFL KEKEKIEEEE KKLKTAIEEA EKQYSEVSSE MKDLETKSKQ FEELEERYWH EFNSFQFQLT SHQVYIPYLL QATHCQLPEE
301: RDAVLAKIEV SQVHLELLKR TNVLNDAFYI SHDGVIGTIN NFRLGRLPNV QVEWDEINAA WGQAALLLHT MAQYFPKFQY RIKIHPMGSY PRVTDINNNT
401: YELFGPVNLF WSTRFDKAMT WFLTCLQEFS ECAISLDKEN NVPADKSLKL PYKIDGDKVG SYTIFLSFNK LENWTKALKY MLCNLKWVLY WFIGNTSFAP
501: PSASLYLAQS PNKKG
101: TRAIEGSYIM LPPAAASIYK TSTSEGGGAH LSPPNLNSTS PSPGNNTGFH SSVTVLKRAF EIASSQTQVE QPLCLECMRV LSDKMDKEIE DVNTDIKAYD
201: ACLQRLEQES YNVLSETDFL KEKEKIEEEE KKLKTAIEEA EKQYSEVSSE MKDLETKSKQ FEELEERYWH EFNSFQFQLT SHQVYIPYLL QATHCQLPEE
301: RDAVLAKIEV SQVHLELLKR TNVLNDAFYI SHDGVIGTIN NFRLGRLPNV QVEWDEINAA WGQAALLLHT MAQYFPKFQY RIKIHPMGSY PRVTDINNNT
401: YELFGPVNLF WSTRFDKAMT WFLTCLQEFS ECAISLDKEN NVPADKSLKL PYKIDGDKVG SYTIFLSFNK LENWTKALKY MLCNLKWVLY WFIGNTSFAP
501: PSASLYLAQS PNKKG
001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT
Arabidopsis Description
ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.