Factsheet for PGSC0003DMT400046335

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050390.2.1	Tomato	cytosol	94.83	94.65
VIT_15s0046g00950.t01	Wine grape	nucleus	79.31	79.31
KRH30023	Soybean	cytosol	73.18	75.05
KRH62897	Soybean	cytosol	73.18	75.05
GSMUA_Achr7P24520_001	Banana	cytosol	71.26	71.4
AT3G61710.1	Thale cress	cytosol	69.73	70.41
CDX67858	Canola	nucleus	67.82	67.95
CDY25058	Canola	nucleus	68.01	67.75
TraesCS3A01G266600.1	Wheat	golgi	64.18	66.6
TraesCS3D01G266800.1	Wheat	nucleus	63.98	66.27
TraesCS3B01G300100.2	Wheat	golgi	64.18	65.05
EES01994	Sorghum	cytosol	62.26	65.0
CDY70494	Canola	cytosol, golgi, plastid	65.33	64.58
CDY25070	Canola	plastid	47.13	64.23
Os01t0681400-01	Rice	cytosol	61.49	64.2
Zm00001d042303_P001	Maize	cytosol	61.11	63.93
Os03t0644000-01	Rice	cytosol	61.11	63.67
GSMUA_Achr7P24530_001	Banana	cytosol	60.34	56.76
Os03t0258500-01	Rice	cytosol	58.24	55.99
KXG33125	Sorghum	cytosol	45.98	53.45
Zm00001d011984_P001	Maize	mitochondrion, plastid	57.66	51.99
HORVU3Hr1G062970.2	Barley	plastid	45.59	44.91
Bra003466.1-P	Field mustard	nucleus	57.85	40.37

Protein Annotations

Gene3D:1.10.418.40	MapMan:22.5.1.2	EMBL:AM075834	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	ProteinID:CAJ27524
ProteinID:CAJ27524.1	ncoils:Coil	GO:GO:0000003	GO:GO:0000045	GO:GO:0000407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006623	GO:GO:0006810	GO:GO:0006914
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009605	GO:GO:0009607
GO:GO:0009846	GO:GO:0009856	GO:GO:0009987	GO:GO:0016043	GO:GO:0050832	InterPro:IPR038274
UniProt:M1BIY9	PFAM:PF04111	EnsemblPlantsGene:PGSC0003DMG400017986	PGSC:PGSC0003DMG400017986	EnsemblPlants:PGSC0003DMT400046335	PANTHER:PTHR12768
PANTHER:PTHR12768:SF4	UniParc:UPI000294FCB4	SEG:seg	:	:	:

Description

Beclin 1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017986]

Coordinates

chr5:-:44719112..44727127

Molecular Weight (calculated)

59100.9 Da

IEP (calculated)

6.092

GRAVY (calculated)

-0.549

Length

522 amino acids

Sequence
(BLAST)

001: MVKGSSATPD KGRTLPVDPN LPRYICQNCH NPLCIAGVDN YADKFFPDSS SRSGMQASSI HGAGSTIGSS RMENSYVMLP KQRNQGSGIP PRGRGSAQPD
101: ASQFGRAMEE SFVVLPPPAA SVYKCEPTSD GAGTNLPPPD GGPPNAPMQS NNSGFHSTIT VLKRAFDIAT TQTQIEQPLC LECMRVLSDK LDKEVEDVNR
201: DIQAYEACLH QLEGEARNVL SEADFLKEKL KIEEEERKLE TAIEETEKQC AVVTAELKEL EMKSSRFKEL EERYWHEFNN FQFQLISHQE ERDAILAKTE
301: VSQAHLEVLK RTNVLNDAFP IWYDGEFGTI NNFRLGRLPK IPVEWDEINA AWGQACLLLH TMAQHFRPKF QYRIKILPMG SYPRIIDTNN TTYELFGPVN
401: LFWSTRYDKA MTLFLTCLKE FSEFANSKDR ENNIRPDKCF KLPYKIENDK VESYSITQSF NKQENWTKAL KYTLCNLKWV LYWFVGNTNF QPLSGTVSSQ
501: AEVPAAAGSL YSKQPINTKF QS

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.