CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67858	Canola	nucleus	84.33	62.0
CDY25058	Canola	nucleus	84.07	61.45
CDY70494	Canola	cytosol, golgi, plastid	84.07	60.98
AT3G61710.1	Thale cress	cytosol	78.85	58.41
KRH30023	Soybean	cytosol	65.8	49.51
VIT_15s0046g00950.t01	Wine grape	nucleus	67.36	49.43
KRH62897	Soybean	cytosol	65.54	49.31
Solyc05g050390.2.1	Tomato	cytosol	64.75	47.42
PGSC0003DMT400046335	Potato	cytosol	64.23	47.13
GSMUA_Achr7P24520_001	Banana	cytosol	59.27	43.57
Zm00001d042303_P001	Maize	cytosol	55.87	42.89
EES01994	Sorghum	cytosol	55.61	42.6
TraesCS3A01G266600.1	Wheat	golgi	55.87	42.54
TraesCS3D01G266800.1	Wheat	nucleus	55.35	42.06
Os03t0644000-01	Rice	cytosol	54.31	41.52
TraesCS3B01G300100.2	Wheat	golgi	55.35	41.16
Os01t0681400-01	Rice	cytosol	53.52	41.0
Os03t0258500-01	Rice	cytosol	52.22	36.83
GSMUA_Achr7P24530_001	Banana	cytosol	53.26	36.76
KXG33125	Sorghum	cytosol	41.78	35.63
Zm00001d011984_P001	Maize	mitochondrion, plastid	53.0	35.06
HORVU3Hr1G062970.2	Barley	plastid	45.17	32.64

Protein Annotations

EnsemblPlants:CDY25070	EnsemblPlantsGene:GSBRNA2T00028911001	Gene3D:1.10.418.40	GO:A0A078GF34	GO:GO:0006914	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	InterPro:IPR038274
ncoils:Coil	PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	PFAM:PF04111	ProteinID:CDY25070	ProteinID:CDY25070.1
UniParc:UPI0004EDED9E	UniProt:A0A078GF34	MapMan:22.5.1.2	:	:	:

Description

BnaC06g18120DBnaC06g18120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF34]

Coordinates

chrLK032168:-:136925..139044

Molecular Weight (calculated)

43329.2 Da

IEP (calculated)

5.918

GRAVY (calculated)

-0.552

Length

383 amino acids

Sequence
(BLAST)

001: MQGSSIHGGN SVLGSTRMDN SFVVLPRHKP QAQGIPPRPR GASSPQPHDE THSGKAMEES FVVVDKPDSA AASQNTLSPA EVGQNGPLHS NTSGFNATIN
101: VLTRAFDIAR TQTQVEQQLC LECMRVLSDK LEKEVEDVTR DVEAYEACVQ RLEGETRDVL SEADFLREKR KVSFKERKLV AAIEESEKQN AEVNRQLKEL
201: ESKGNRFNEL EDGCRQEFNN FQFQLIAHQE ERDAILAKIE VSQAHLELLN KTNVLIDAFP IRYDGDFGTI NNFRLGRLPK APVEWDEINA AWGQACLLLH
301: TILSLTSNPF LRCRVKIQPM GSYPRFLDST NSTYELFGPV NLFWSTRYDK AMTLYLICLQ EQYSTRGMPQ SPVQDYYKKT IPK

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.