CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G266800.1	Wheat	nucleus	68.6	61.11
TraesCS3A01G266600.1	Wheat	golgi	68.37	61.03
EES01994	Sorghum	cytosol	66.15	59.4
TraesCS3B01G300100.2	Wheat	golgi	67.93	59.22
Os01t0681400-01	Rice	cytosol	65.48	58.8
Os03t0644000-01	Rice	cytosol	63.7	57.09
Os03t0258500-01	Rice	cytosol	63.03	52.12
HORVU3Hr1G062970.2	Barley	plastid	59.69	50.57
PGSC0003DMT400046335	Potato	cytosol	53.45	45.98
GSMUA_Achr7P24520_001	Banana	cytosol	53.01	45.68
VIT_15s0046g00950.t01	Wine grape	nucleus	53.01	45.59
Solyc05g050390.2.1	Tomato	cytosol	53.01	45.51
KRH30023	Soybean	cytosol	50.56	44.6
KRH62897	Soybean	cytosol	49.44	43.61
AT3G61710.1	Thale cress	cytosol	48.11	41.78
CDY25070	Canola	plastid	35.63	41.78
CDX67858	Canola	nucleus	46.33	39.92
CDY25058	Canola	nucleus	46.1	39.5
GSMUA_Achr7P24530_001	Banana	cytosol	47.66	38.56
CDY70494	Canola	cytosol, golgi, plastid	45.21	38.45
Bra003466.1-P	Field mustard	nucleus	42.32	25.4

Protein Annotations

EnsemblPlants:KXG33125	EnsemblPlantsGene:SORBI_3003G258300	Gene3D:1.10.418.40	GO:GO:0006914	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	InterPro:IPR038274	ncoils:Coil
PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	PFAM:PF04111	ProteinID:KXG33125	ProteinID:KXG33125.1	SEG:seg
UniParc:UPI00081AE1AC	UniProt:A0A1B6Q5G2	MapMan:22.5.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:59630121..59633937

Molecular Weight (calculated)

50506.3 Da

IEP (calculated)

6.641

GRAVY (calculated)

-0.429

Length

449 amino acids

Sequence
(BLAST)

001: MKRPTGGKGG AVDPSPLRTR CKECHGALVV VGADSGMHAS AAQGSTMGAG SMDSSYVVLS KNNRSQGPGI PPRPRSAAAP HIEPNQPPRP IEGSYIMLPP
101: PAASIYKTSS SEGVGRQLLP PSVNSSSSMP GNNSGFFSSV TVLKRAFEIA TSQTQVKQPL CLECMRILSD KMDFEIEDIS CDIKAYEASL QHLEQESYSI
201: LSEMDFLKEK KKIEEEEKKL RPDIEEAEKQ YSEVISEMKD LETKCKHFKE LKEQYWQEFN SFCFQRKSHQ EEQNAILAKI EVSQAHLELL KHTNVLNDAF
301: YISQHGVFGT INNLRLGHSP EVEWDEINAA WGQVALLLHI MAQYFTPKYQ YPWHIMIFSR SLCTQSLFSE VYPNYGSIGL LLWIDGDKIG GYRVVLGDFN
401: TKENSTKALK NMLCDLKWVL YWFIGTASFD LPLDQCRCKL RRDSLKPDN

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.