CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25058	Canola	nucleus	90.91	91.6
CDX67858	Canola	nucleus	88.64	89.83
CDY25070	Canola	plastid	60.98	84.07
AT3G61710.1	Thale cress	cytosol	79.36	81.04
KRH62897	Soybean	cytosol	67.99	70.53
KRH30023	Soybean	cytosol	67.8	70.33
VIT_15s0046g00950.t01	Wine grape	nucleus	69.51	70.31
Solyc05g050390.2.1	Tomato	cytosol	64.96	65.58
PGSC0003DMT400046335	Potato	cytosol	64.58	65.33
GSMUA_Achr7P24520_001	Banana	cytosol	58.71	59.5
EES01994	Sorghum	cytosol	53.22	56.2
Zm00001d042303_P001	Maize	cytosol	53.03	56.11
Os01t0681400-01	Rice	cytosol	53.03	56.0
TraesCS3D01G266800.1	Wheat	nucleus	53.03	55.56
Os03t0644000-01	Rice	cytosol	52.65	55.49
TraesCS3A01G266600.1	Wheat	golgi	52.84	55.47
Bra003466.1-P	Field mustard	nucleus	78.41	55.35
TraesCS3B01G300100.2	Wheat	golgi	52.84	54.17
GSMUA_Achr7P24530_001	Banana	cytosol	53.41	50.81
Os03t0258500-01	Rice	cytosol	50.19	48.8
Zm00001d011984_P001	Maize	mitochondrion, plastid	50.19	45.77
KXG33125	Sorghum	cytosol	38.45	45.21
HORVU3Hr1G062970.2	Barley	plastid	36.93	36.79

Protein Annotations

EnsemblPlants:CDY70494	EnsemblPlantsGene:GSBRNA2T00003901001	Gene3D:1.10.418.40	GO:A0A078JUL3	GO:GO:0006914	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	InterPro:IPR038274
ncoils:Coil	PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	PFAM:PF04111	ProteinID:CDY70494	ProteinID:CDY70494.1
SEG:seg	UniParc:UPI0004EF4C57	UniProt:A0A078JUL3	MapMan:22.5.1.2	:	:

Description

BnaC06g42970DBnaC06g42970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JUL3]

Coordinates

chrLK042293:-:52..2786

Molecular Weight (calculated)

59702.7 Da

IEP (calculated)

6.157

GRAVY (calculated)

-0.466

Length

528 amino acids

Sequence
(BLAST)

001: MEPTVFLVQH AWTRALHFRL DVTITLLVCN EIVDMPSCPN DLCYIKKLMK LLHPAAMQGS SIHGANSVLG STRMDNSFVV LPRHKPQAQG IPPRPRGASS
101: PQPHDATHCG KAMEESFVVV DKSESASDSG AASQNTLSSL EVGQNGPLHS NTSGFNTTIN VLNRAFDIAR TQTQVEQPLC LECMRVLSDK LEKEVEDVTR
201: DVEAYEACVQ RLEGETQDVL SEADFLREKR KIEEEERKLV AAIEESARQN AEVNRQLKEL ESKGNRFNEL EDRYWQEFNN FQCQLIAHQE ERDAILAKIE
301: VSQAHLELLN KTNVLIDAFP IRYDGDFGTI NNFRLGRLPK APVEWDEINA AWGQACLLLH TMCNYFRPKF QCRVKIQPMG SYPRIVDSTN STYELFGPVN
401: LFWSTRYDKA MTLYLLCLKD FADFANAKDQ ENNIPPEKCL KLPFKIENDK VESYSITQSF NKQENWTKAL KYTLCNLKWA LYWFVGNTNF QPLSATVSLP
501: SDVSAAGSLY AKRGPGSNNP SGKNSRNS

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.