CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25058	Canola	nucleus	95.97	95.42
CDY70494	Canola	cytosol, golgi, plastid	89.83	88.64
AT3G61710.1	Thale cress	cytosol	85.41	86.07
CDY25070	Canola	plastid	62.0	84.33
VIT_15s0046g00950.t01	Wine grape	nucleus	73.51	73.37
KRH30023	Soybean	cytosol	71.21	72.89
KRH62897	Soybean	cytosol	71.21	72.89
Solyc05g050390.2.1	Tomato	cytosol	68.33	68.07
PGSC0003DMT400046335	Potato	cytosol	67.95	67.82
GSMUA_Achr7P24520_001	Banana	cytosol	62.96	62.96
EES01994	Sorghum	cytosol	56.43	58.8
Zm00001d042303_P001	Maize	cytosol	55.85	58.32
TraesCS3A01G266600.1	Wheat	golgi	55.85	57.85
TraesCS3D01G266800.1	Wheat	nucleus	55.47	57.34
Os01t0681400-01	Rice	cytosol	54.89	57.2
Os03t0644000-01	Rice	cytosol	54.89	57.09
Bra003466.1-P	Field mustard	nucleus	81.96	57.09
TraesCS3B01G300100.2	Wheat	golgi	55.28	55.92
GSMUA_Achr7P24530_001	Banana	cytosol	56.43	52.97
Os03t0258500-01	Rice	cytosol	51.82	49.72
Zm00001d011984_P001	Maize	mitochondrion, plastid	52.78	47.5
KXG33125	Sorghum	cytosol	39.92	46.33
HORVU3Hr1G062970.2	Barley	plastid	38.96	38.3

Protein Annotations

EnsemblPlants:CDX67858	EnsemblPlantsGene:GSBRNA2T00099058001	Gene3D:1.10.418.40	GO:A0A078BY42	GO:GO:0006914	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	InterPro:IPR038274
ncoils:Coil	PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	PFAM:PF04111	ProteinID:CDX67858	ProteinID:CDX67858.1
SEG:seg	UniParc:UPI0004EDD07C	MapMan:22.5.1.2	:	:	:

Description

BnaA07g18980D

Coordinates

chrLK031787:-:2637051..2640336

Molecular Weight (calculated)

58866.0 Da

IEP (calculated)

6.208

GRAVY (calculated)

-0.632

Length

521 amino acids

Sequence
(BLAST)

001: MRKEENNNHQ TDNKSRDLPK WVCQKCQHSL TIVGVDSYAG KFCNDSPPSA MQGSSIHGAN SVLGSTRMDN SFVVLPRHKP QAQGIPPRPR GASSPQPHDA
101: THSGKAMDES FVVVYKSESA SDSGAASQNT LSSVEVGQNG PLHSNTSGFN SSINVLNRAF DIARTQTQVE QPLCLECMRV LSDKLEKEVE DVTRDVEAYE
201: ACVQRLEGET QDVLSEADFL REKRKIEEEE RKLVAAIEES EKQNAEVNRQ LKELESKGNR FNELEDRYWQ EFNNFQCQLI AHQEERDAIL AKIEVSQAHL
301: ELLNKTNVLI DAFPIRYDGD FGTINNFRLG RLPKAPVEWD EINAAWGQAC LLLHTMCNYF RPKFQCRVKI QPMGSYPRIV DSTNSTYELF GPVNLFWSTR
401: YDKAMTLYLL CLKDFADFAN AKDQENNIPP EKCLKLPFKI ENDKVESYSI TQSFNKQENW TKALKYTLCN LKWALYWFVG NTNFQPLSAT VSLPSDVSAA
501: GSLYAKRGPG SNNPSSKTSR N

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.