CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67858	Canola	nucleus	95.42	95.97
CDY70494	Canola	cytosol, golgi, plastid	91.6	90.91
AT3G61710.1	Thale cress	cytosol	85.11	86.27
CDY25070	Canola	plastid	61.45	84.07
KRH62897	Soybean	cytosol	71.18	73.28
KRH30023	Soybean	cytosol	71.18	73.28
VIT_15s0046g00950.t01	Wine grape	nucleus	72.71	72.99
Solyc05g050390.2.1	Tomato	cytosol	68.13	68.26
PGSC0003DMT400046335	Potato	cytosol	67.75	68.01
GSMUA_Achr7P24520_001	Banana	cytosol	62.4	62.76
EES01994	Sorghum	cytosol	55.53	58.2
Zm00001d042303_P001	Maize	cytosol	54.96	57.72
TraesCS3A01G266600.1	Wheat	golgi	54.96	57.26
Os01t0681400-01	Rice	cytosol	54.58	57.2
TraesCS3D01G266800.1	Wheat	nucleus	54.58	56.75
Os03t0644000-01	Rice	cytosol	54.01	56.49
Bra003466.1-P	Field mustard	nucleus	79.96	56.02
TraesCS3B01G300100.2	Wheat	golgi	54.39	55.34
GSMUA_Achr7P24530_001	Banana	cytosol	55.73	52.61
Os03t0258500-01	Rice	cytosol	51.53	49.72
Zm00001d011984_P001	Maize	mitochondrion, plastid	51.72	46.8
KXG33125	Sorghum	cytosol	39.5	46.1
HORVU3Hr1G062970.2	Barley	plastid	38.17	37.74

Protein Annotations

EnsemblPlants:CDY25058	EnsemblPlantsGene:GSBRNA2T00028896001	Gene3D:1.10.418.40	GO:A0A078GKF4	GO:GO:0006914	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	InterPro:Atg6/Beclin	InterPro:Atg6/Beclin_C_sf	InterPro:IPR038274
ncoils:Coil	PANTHER:PTHR12768	PANTHER:PTHR12768:SF4	PFAM:PF04111	ProteinID:CDY25058	ProteinID:CDY25058.1
SEG:seg	UniParc:UPI0004EE7CA4	UniProt:A0A078GKF4	MapMan:22.5.1.2	:	:

Description

BnaC06g18000DBnaC06g18000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKF4]

Coordinates

chrLK032168:-:67259..71299

Molecular Weight (calculated)

59214.5 Da

IEP (calculated)

6.303

GRAVY (calculated)

-0.614

Length

524 amino acids

Sequence
(BLAST)

001: MRKEENNYHT DNKSRVDPNL PKWVCQKCHH SLTIVGVDSY AGKFFNDSPP SAMQGSSIHG ANSVLGSTRM DNSFVVLPRH KPQAQGIPPR PRGASSPQPH
101: DATHCGKAME ESFVVVDKSE SASDSGAASQ NTLSSLEVGQ NGPLHSNTSG FNTTINVLNR AFDIARTQTQ VEQPLCLECM RVLSDKLEKE VEDVTRDVEA
201: YEACVQRLEG ETQDVLSEAD FLREKRKIEE EERKLVAAIE ESARQNAEVN RQLKELESKG NRFNELEDRY WQEFNNFQCQ LIAHQEERDA ILAKIEVSQA
301: HLELLNKTNV LIDAFPIRYD GDFGTINNFR LGRLPKAPVE WDEINAAWGQ ACLLLHTMCN YFRPKFQCRV KIQPMGSYPR IVDSTNSTYE LFGPVNLFWS
401: TRYDKAMTLY LLCLKDFADF ANAKDQENNI PPEKCLKLPF KIENDKVESY SITQSFNKQE NWTKALKYTL CNLKWALYWF VGNTNFQPLS ATVSLPSDVS
501: AAGSLYAKRG PGSNNPSGKN SRNS

Best Arabidopsis Sequence Match ( AT3G61710.1 )
(BLAST)

001: MRKEEIPDKS RTIPIDPNLP KWVCQNCHHS LTIVGVDSYA GKFFNDPPPS ATQGSSIHGA NSVLGSTRMD NSFVVLPRHK PPQSQGIPPR PRGASSPQPD
101: ATQSGKAMEE SFVVVYKSEP VSDSGGSHNL SLEVGQNGPL HSNTSGFNAT INVLTRAFDI ARTQTQVEQP LCLECMRVLS DKLEKEVEDV TRDVEAYEAC
201: VQRLEGETQD VLSEADFLKE KKKIEEEERK LVAAIEETEK QNAEVNHQLK ELEFKGNRFN ELEDRYWQEF NNFQFQLIAH QEERDAILAK IEVSQAHLEL
301: LNKTNVLIDA FPIRNDGEFG TINNFRLGRL PAIKVEWDEI NAAWGQACLL LHTMCNYFRP KFQCQVKIQP MGSYPRIVDS NNETYELFGP VNLFWSTRYD
401: KAMTLYLMCL KDFADFANSK DQENNIPPDN CLNLPYKIEK DKVLGYSITQ SFNKQESWTK ALKYTLCNLK WALYWFVGNT NFQPLSATVS LPSNISAAGS
501: LYAKRGPDSS KPSCKKT

Arabidopsis Description

ATG6Beclin-1-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9M367]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.